Query gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs 127 out of 965
Neff 6.6
Searched_HMMs 13730
Date Wed Jun 1 10:11:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780841.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cx6a1 c.9.1.1 (A:1-90) Hypot 48.1 5.2 0.00038 16.6 2.4 27 62-92 20-46 (90)
2 d1ay7b_ c.9.1.1 (B:) Barstar ( 36.7 9.9 0.00072 15.0 2.4 24 62-89 19-42 (89)
3 d2fefa2 a.254.1.1 (A:135-293) 8.5 47 0.0034 11.2 4.5 46 40-92 9-54 (159)
4 d1z9ha1 a.45.1.1 (A:213-373) M 7.5 52 0.0038 11.0 2.9 40 53-96 93-132 (161)
5 d1ppjc1 f.32.1.1 (C:261-379) M 6.1 62 0.0045 10.5 7.7 74 167-242 37-114 (119)
6 d1i6ua_ d.140.1.1 (A:) Ribosom 6.0 63 0.0046 10.5 0.9 10 81-90 3-12 (129)
7 d1mmsa2 d.47.1.1 (A:8-70) Ribo 4.7 60 0.0044 10.6 -0.5 16 127-144 34-49 (63)
8 d2di0a1 a.5.2.4 (A:8-70) Activ 4.3 86 0.0062 9.7 1.4 11 78-88 3-13 (63)
9 d1pj3a2 c.58.1.3 (A:21-279) Mi 4.2 89 0.0064 9.6 1.3 13 74-86 204-216 (259)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 4.1 90 0.0065 9.6 4.5 84 137-220 3-97 (100)
No 1
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=48.11 E-value=5.2 Score=16.63 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=19.5
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999828743675326366755799999999
Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTYVV 92 (246)
Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv 92 (246)
.+|+.++--..+ |..+|.|-|.+|=++
T Consensus 20 ~~~~~l~fp~~f----G~NlDAl~D~lt~~~ 46 (90)
T d2cx6a1 20 DFSQTFGLAKDK----VRDLDSLWDVLMNDV 46 (90)
T ss_dssp HHHHHTTCCTTS----CSSHHHHHHHHHTTC
T ss_pred HHHHHCCCCCHH----CCCHHHHHHHHCCCC
T ss_conf 999984996010----777899999972677
No 2
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=36.69 E-value=9.9 Score=15.04 Aligned_cols=24 Identities=29% Similarity=0.708 Sum_probs=18.1
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999828743675326366755799999
Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLT 89 (246)
Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vs 89 (246)
.+++.++- |..+|..+|.+-|.+|
T Consensus 19 ~~~~~l~~----p~~~G~N~DAl~D~lt 42 (89)
T d1ay7b_ 19 TLKKELAL----PEYYGENLDALWDCLT 42 (89)
T ss_dssp HHHHHTTC----CTTCCSSHHHHHHHHH
T ss_pred HHHHHCCC----CCCCCCCHHHHHHHHC
T ss_conf 99998399----7100778889999970
No 3
>d2fefa2 a.254.1.1 (A:135-293) Hypothetical protein PA2201 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.48 E-value=47 Score=11.22 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 49889999999999998312389999828743675326366755799999999
Q gi|254780841|r 40 QYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVV 92 (246)
Q Consensus 40 ~g~~~~A~~~i~iA~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv 92 (246)
+++|+.+++++-+|..+|.-|=.-.|.-.+ . |.+-|-+-|++.++-
T Consensus 9 ~d~Y~~~lwllSl~iLL~~~dllp~~v~~v-~------~~~~D~Lld~ll~~~ 54 (159)
T d2fefa2 9 TGQYPFALQLLAMGVLLDAQELIPALVEEV-L------QFDTDRLLDYLGAAA 54 (159)
T ss_dssp TTTHHHHHHHHHHHHHTTCGGGHHHHHHHT-S------TTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHHHHHH-H------CCCCCHHHHHHHHHH
T ss_conf 753999999999999947736679999999-8------016520899999985
No 4
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=7.49 E-value=52 Score=10.96 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99983123899998287436753263667557999999999999
Q gi|254780841|r 53 ALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAF 96 (246)
Q Consensus 53 A~i~D~lDG~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGvaPa~ 96 (246)
.-+.|.+|..+.+..+.+.-+ |.+==++||+..||+.-.+
T Consensus 93 ~~L~~~ld~f~~~~l~~~~F~----gGd~P~lADlavfg~l~~~ 132 (161)
T d1z9ha1 93 EDLYEAADKWVAAVGKDRPFM----GGQKPNLADLAVYGVLRVM 132 (161)
T ss_dssp HHHHHHHHHHHHHHCSSCSBT----TBTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999850799846----8999868789887445555
No 5
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.10 E-value=62 Score=10.54 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf 999999999873127873011100256899999999--9999999-63223-8999999999999999999999721134
Q gi|254780841|r 167 TSVILTFVPVNFLHPIRVVRLRPLNFFVFVCWCLLG--FYALISN-FQVCR-WFSFAFSVCGIYLYSIGAILQIFPNLGK 242 (246)
Q Consensus 167 ~~~~l~~~~i~~i~~~r~~~~k~~~~~~~~~~~~~~--~~~l~~~-~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 242 (246)
....+.+.|..--++.|..+.|. ......|.... +.+.+.. ...+. ......+.+..|+....+...+..+..+
T Consensus 37 si~il~~lP~l~~~~~~s~~~~~--~~~~~fw~fv~~fi~L~wlG~~p~e~p~~~~gqi~tv~YF~~flillP~~~~~E~ 114 (119)
T d1ppjc1 37 SILILALIPLLHTSKQRSMMFRP--LSQCLFWALVADLLTLTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGTIEN 114 (119)
T ss_dssp HHHGGGTHHHHCCCSSSSSTTCH--HHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEECH--HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999887203677983580--8999999999989999881258984368889999999999999999999999999
No 6
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.97 E-value=63 Score=10.49 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q ss_conf 7557999999
Q gi|254780841|r 81 LDNIIDYLTY 90 (246)
Q Consensus 81 LDSLaD~vsF 90 (246)
.|.+||++|=
T Consensus 3 ~D~iaD~ltr 12 (129)
T d1i6ua_ 3 MDPLANALNH 12 (129)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 6579999998
No 7
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.69 E-value=60 Score=10.61 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=10.5
Q ss_pred HHCCCCCCCCEEEEECHH
Q ss_conf 503557898432301078
Q gi|254780841|r 127 YTNMKTEEHFFSGFPAVW 144 (246)
Q Consensus 127 rfN~~~~~~~F~GlP~pa 144 (246)
.||.+|++ +.|.|.|.
T Consensus 34 ~fN~~Tk~--~~g~~vpV 49 (63)
T d1mmsa2 34 RFNAETAD--KAGMILPV 49 (63)
T ss_dssp HHHHHTTT--SCSSEEEE
T ss_pred HHHHHHCC--CCCCEEEE
T ss_conf 99987533--59986868
No 8
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.27 E-value=86 Score=9.73 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 36675579999
Q gi|254780841|r 78 GDTLDNIIDYL 88 (246)
Q Consensus 78 G~~LDSLaD~v 88 (246)
|+|+||+.+-|
T Consensus 3 ~vel~s~I~qV 13 (63)
T d2di0a1 3 GVELDSLISQV 13 (63)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 46899999999
No 9
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.16 E-value=89 Score=9.64 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 5326366755799
Q gi|254780841|r 74 PNWSGDTLDNIID 86 (246)
Q Consensus 74 p~~~G~~LDSLaD 86 (246)
||+.|.|+|++.|
T Consensus 204 ~R~~g~~Yd~fid 216 (259)
T d1pj3a2 204 KRDRTQQYDDLID 216 (259)
T ss_dssp CCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 7876157899999
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.12 E-value=90 Score=9.62 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEEEECHHHHHH------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHHHHHHHH
Q ss_conf 323010789999------999982232259999999999999999873127873011100256-----899999999999
Q gi|254780841|r 137 FSGFPAVWNMVV------FSLIALNASVLVSTIVITTSVILTFVPVNFLHPIRVVRLRPLNFF-----VFVCWCLLGFYA 205 (246)
Q Consensus 137 F~GlP~pa~a~~------~~~~~l~~~~~~~~~~i~~~~~l~~~~i~~i~~~r~~~~k~~~~~-----~~~~~~~~~~~~ 205 (246)
..|.|.||+..+ ..--+...+.......+..........+..+...|.++-+...-. .-..|++.-.++
T Consensus 3 ~~~~P~~~ql~fqd~as~~a~~i~~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lI 82 (100)
T d3dtub2 3 IIGRPQPGGTGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVI 82 (100)
T ss_dssp EEESCCTTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999888768989899899999999999999999999999999999962311359988752447546899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999963223899999
Q gi|254780841|r 206 LISNFQVCRWFSFAF 220 (246)
Q Consensus 206 l~~~~~~~~~~~~~~ 220 (246)
+......+.-.....
T Consensus 83 Li~l~~pS~~~ly~m 97 (100)
T d3dtub2 83 LVAIGAFSLPVLFNQ 97 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999977
Done!