RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] (246 letters) >3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* (A:) Length = 280 Score = 30.6 bits (69), Expect = 0.22 Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 16/174 (9%) Query: 61 GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120 + K+ KE++ NW+ N+ ++ F + + G + Sbjct: 98 AKASGKISWKELVRNWTVVYFGNLCG----SIILVFIMLATRQFMEDGGQLGLN-----A 148 Query: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180 +I + + F G + + + +A L +++ + FV F H Sbjct: 149 MAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEH 208 Query: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAIL 234 I N F + ++A S + + ++ + + ++ Sbjct: 209 CI-------ANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLI 255 >3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC COA P6G; 1.70A {Homo sapiens} PDB: 2f0x_A* 2cy9_A (A:) Length = 148 Score = 27.7 bits (61), Expect = 1.4 Identities = 7/70 (10%), Positives = 28/70 (40%) Query: 115 GMMVISSSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFV 174 + ++S++ MK EE + + + +L+ +++ + + + Sbjct: 27 KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDM 86 Query: 175 PVNFLHPIRV 184 + ++ P ++ Sbjct: 87 NITYMSPAKL 96 >2h4u_A Thioesterase superfamily member 2; structural genomics, structural genomics consortium, SGC, hydrolase; 2.20A {Homo sapiens} (A:) Length = 145 Score = 27.0 bits (59), Expect = 2.3 Identities = 7/70 (10%), Positives = 28/70 (40%) Query: 115 GMMVISSSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFV 174 + ++S++ MK EE + + + +L+ +++ + + + Sbjct: 32 KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDM 91 Query: 175 PVNFLHPIRV 184 + ++ P ++ Sbjct: 92 NITYMSPAKL 101 >3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A (A:) Length = 285 Score = 26.5 bits (58), Expect = 3.4 Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 16/177 (9%) Query: 61 GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120 + ++ ++ NW N++ L +V+L + G + + + Sbjct: 99 AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVH 158 Query: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180 + A G A + + ++ + L+ I + FV F H Sbjct: 159 HTFIEA---------VCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEH 209 Query: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIF 237 I N F+ ++ +A + FS + + ++ + Sbjct: 210 SI-------ANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVT 259 >1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} (A:1-282) Length = 282 Score = 25.6 bits (56), Expect = 5.9 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 7/69 (10%) Query: 167 TSVILTFVPVNFLHPIRVVRL-------RPLNFFVFVCWCLLGFYALISNFQVCRWFSFA 219 + FVP I V + R ++ F FV + + N Q+ + + Sbjct: 117 HARKTLFVPKGEDAEIWDVVIKNTSDQVRTISAFSFVEFSFSHIQSDNQNHQMSLYSAGT 176 Query: 220 FSVCGIYLY 228 G+ Y Sbjct: 177 AYRPGLIEY 185 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.331 0.142 0.451 Gapped Lambda K H 0.267 0.0596 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,930,582 Number of extensions: 82521 Number of successful extensions: 195 Number of sequences better than 10.0: 1 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 24 Length of query: 246 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 160 Effective length of database: 2,048,819 Effective search space: 327811040 Effective search space used: 327811040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 53 (24.5 bits)