RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)



>3kly_A Putative formate transporter 1; membrane protein, channel,
           structural genomics, PSI-2, protein structure
           initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB:
           3klz_A* (A:)
          Length = 280

 Score = 30.6 bits (69), Expect = 0.22
 Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 16/174 (9%)

Query: 61  GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120
              + K+  KE++ NW+     N+       ++  F +  +       G          +
Sbjct: 98  AKASGKISWKELVRNWTVVYFGNLCG----SIILVFIMLATRQFMEDGGQLGLN-----A 148

Query: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180
            +I     +    + F  G      + +   +  +A  L   +++    +  FV   F H
Sbjct: 149 MAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEH 208

Query: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAIL 234
            I        N F       + ++A  S + +       ++      + +  ++
Sbjct: 209 CI-------ANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLI 255


>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase;
           HET: UOC COA P6G; 1.70A {Homo sapiens} PDB: 2f0x_A*
           2cy9_A (A:)
          Length = 148

 Score = 27.7 bits (61), Expect = 1.4
 Identities = 7/70 (10%), Positives = 28/70 (40%)

Query: 115 GMMVISSSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFV 174
            + ++S++       MK EE   +    +   +  +L+   +++ +         +   +
Sbjct: 27  KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDM 86

Query: 175 PVNFLHPIRV 184
            + ++ P ++
Sbjct: 87  NITYMSPAKL 96


>2h4u_A Thioesterase superfamily member 2; structural genomics,
           structural genomics consortium, SGC, hydrolase; 2.20A
           {Homo sapiens} (A:)
          Length = 145

 Score = 27.0 bits (59), Expect = 2.3
 Identities = 7/70 (10%), Positives = 28/70 (40%)

Query: 115 GMMVISSSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFV 174
            + ++S++       MK EE   +    +   +  +L+   +++ +         +   +
Sbjct: 32  KITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDM 91

Query: 175 PVNFLHPIRV 184
            + ++ P ++
Sbjct: 92  NITYMSPAKL 101


>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel,
           cell inner membrane, cell membrane, membrane,
           transmembrane; HET: MA5; 2.24A {Escherichia coli O157}
           PDB: 3kcv_A (A:)
          Length = 285

 Score = 26.5 bits (58), Expect = 3.4
 Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 16/177 (9%)

Query: 61  GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120
              + ++   ++  NW      N++  L +V+L   +       G    + +      + 
Sbjct: 99  AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVH 158

Query: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180
            +   A            G  A   + +   ++ +   L+    I    +  FV   F H
Sbjct: 159 HTFIEA---------VCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEH 209

Query: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIF 237
            I        N F+     ++  +A    +         FS   +  +    ++ + 
Sbjct: 210 SI-------ANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVT 259


>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6
           barrel, transferase; HET: NDG NAG; 1.60A {Vibrio
           proteolyticus} (A:1-282)
          Length = 282

 Score = 25.6 bits (56), Expect = 5.9
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 7/69 (10%)

Query: 167 TSVILTFVPVNFLHPIRVVRL-------RPLNFFVFVCWCLLGFYALISNFQVCRWFSFA 219
            +    FVP      I  V +       R ++ F FV +      +   N Q+  + +  
Sbjct: 117 HARKTLFVPKGEDAEIWDVVIKNTSDQVRTISAFSFVEFSFSHIQSDNQNHQMSLYSAGT 176

Query: 220 FSVCGIYLY 228
               G+  Y
Sbjct: 177 AYRPGLIEY 185


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,930,582
Number of extensions: 82521
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 24
Length of query: 246
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 160
Effective length of database: 2,048,819
Effective search space: 327811040
Effective search space used: 327811040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.5 bits)