HHsearch alignment for GI: 254780842 and conserved domain: COG0654

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].
Probab=100.00  E-value=0  Score=479.33  Aligned_cols=377  Identities=30%  Similarity=0.453  Sum_probs=336.5

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC--CCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf             7002999979089999999999789859998288--55557836888788999999889947888604712341899425
Q gi|254780842|r    2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR--SFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT   79 (384)
Q Consensus         2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~--~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   79 (384)
T Consensus         1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~   80 (387)
T COG0654           1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG   80 (387)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECC
T ss_conf             98549999978999999999982899689990776113557559998989999999849907776157886037999659


Q ss_pred             CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECC-CCCEEEEEEEEE
Q ss_conf             765545444345022287531201110000000012366479832-342056530268717898302-320121112353
Q gi|254780842|r   80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLS-TGQQIVGQFLIG  157 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~-dg~~i~adlvVg  157 (384)
T Consensus        81 ~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVg  156 (387)
T COG0654          81 GR----RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVG  156 (387)
T ss_pred             CC----EEEEECHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCEEEECCEEEE
T ss_conf             96----38981522168776279988899999999998718982999577799988539737999903991997599998


Q ss_pred             ECCCCCCCCCCCCCC-CCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf             037543200037873-3222243047876411478861178872278754210001232011267507567324553223
Q gi|254780842|r  158 SDGRNSSVRRQMGYG-ENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPV  236 (384)
Q Consensus       158 ADG~~S~vR~~l~~~-~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~~  236 (384)
T Consensus       157 ADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T COG0654         157 ADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD  236 (387)
T ss_pred             CCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHCCCCH
T ss_conf             89987699974698765577555069999703778888716899238976799874889668999913861454023786


Q ss_pred             HHHHHHHHHCCCCC--CCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             46788776306754--6762111022320223343045653794210110011384456532112123899999985257
Q gi|254780842|r  237 NEIARRLEQYLYPV--IGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEH  314 (384)
Q Consensus       237 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~  314 (384)
T Consensus       237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlg~~Da~~La~~L~~~~  316 (387)
T COG0654         237 EEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAP  316 (387)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCEECCEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999864974335604553532012212412011364888999556676898610457677989999999999754


Q ss_pred             C-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf             9-90-79999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r  315 M-SF-RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR  382 (384)
Q Consensus       315 ~-~~-~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~  382 (384)
T Consensus       317 ~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~  386 (387)
T COG0654         317 RPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAGLV  386 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             1685189999999997889999999999988643447617778788898740215014778875420237