HHsearch alignment for GI: 254780842 and conserved domain: COG1206

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis].
Probab=96.55  E-value=0.0019  Score=44.22  Aligned_cols=122  Identities=20%  Similarity=0.278  Sum_probs=68.8

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC------CCCEEEECHHH---HHHHHHCCCHHH-HHHCCCCC
Q ss_conf             970029999790899999999997898599982885555------78368887889---999998899478-88604712
Q gi|254780842|r    1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ------DLRTTMLMGEG---IDFLKEINVWDF-LQDIAEPV   70 (384)
Q Consensus         1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~------~~r~~~l~~~s---~~~L~~lGl~~~-l~~~~~~~   70 (384)
T Consensus         1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSli   80 (439)
T COG1206           1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLI   80 (439)
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             98772589756544519999998769837999704566897544565243021255464034444578899999721178


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHCCCCCC-CCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf             341899425765545444345022287531-201110000000012366479832342056530268717898
Q gi|254780842|r   71 SSFRLVDITDRLITAPDAIFHSSEIGLDAF-GYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTI  142 (384)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v  142 (384)
T Consensus        81 -----i-------------~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~--dg~~v  133 (439)
T COG1206          81 -----I-------------EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP--DGITV  133 (439)
T ss_pred             -----H-------------HHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCCEE
T ss_conf             -----6-------------64154068887604661767789999998539977987110146899--88579