HHsearch alignment for GI: 254780842 and conserved domain: COG1252

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=96.08  E-value=0.0065  Score=40.29  Aligned_cols=62  Identities=10%  Similarity=0.139  Sum_probs=42.0

Q ss_pred             HHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf             1100000000123664798323420565302687178983023201211123530375432000
Q gi|254780842|r  104 IPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRR  167 (384)
Q Consensus       104 i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~  167 (384)
T Consensus        54 l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V--~~~~~~~i~YD~LVvalGs~~~~fg  115 (405)
T COG1252          54 LSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKV--TLADLGEISYDYLVVALGSETNYFG  115 (405)
T ss_pred             CCHHHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEE--EECCCCCCCCCEEEEECCCCCCCCC
T ss_conf             7756521308998423574489997899971567989--9578870236389994587667689