HHsearch alignment for GI: 254780842 and conserved domain: COG1635
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism].
Probab=98.87 E-value=2.7e-08 Score=79.86 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=80.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC---C-----EEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEE
Q ss_conf 02999979089999999999789859998288555578---3-----688878899999988994788860471234189
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL---R-----TTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRL 75 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~---r-----~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 75 (384)
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y--e----~~e---- 100 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRY--E----EEE---- 100 (262)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCC--E----ECC----
T ss_conf 267998768505789999986796499997301468763344333560444253899999819852--4----457----
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE-EE---EEEC-------
Q ss_conf 942576554544434502228753120111000000001236647983234205653026871-78---9830-------
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE-EV---TILL------- 144 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~v---~v~~------- 144 (384)
T Consensus 101 ----~g~-------------------~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~ 157 (262)
T COG1635 101 ----DGY-------------------YVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG 157 (262)
T ss_pred ----CCE-------------------EEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEECCHHHHCC
T ss_conf ----966-------------------983279999999999873081024232477899816994689998251222056
Q ss_pred --CCCCEEEEEEEEEECCCCCCCCCC
Q ss_conf --232012111235303754320003
Q gi|254780842|r 145 --STGQQIVGQFLIGSDGRNSSVRRQ 168 (384)
Q Consensus 145 --~dg~~i~adlvVgADG~~S~vR~~ 168 (384)
T Consensus 158 lhvDPl~i~a~~VvDaTGHda~v~~~ 183 (262)
T COG1635 158 LHVDPLTIRAKAVVDATGHDAEVVSF 183 (262)
T ss_pred CCCCCCEEEEEEEEECCCCCHHHHHH
T ss_conf 54275112478999678884289999