HHsearch alignment for GI: 254780842 and conserved domain: PRK06069
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=98.59 E-value=1.6e-06 Score=66.87 Aligned_cols=149 Identities=25% Similarity=0.339 Sum_probs=76.0
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCC-----EE--EECH----HHHH-----HHHHC-C
Q ss_conf 97--00299997908999999999978---98599982885555783-----68--8878----8999-----99988-9
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKK---GFLTALVSPRSFLQDLR-----TT--MLMG----EGID-----FLKEI-N 58 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~---g~~v~iiE~~~~~~~~r-----~~--~l~~----~s~~-----~L~~l-G 58 (384)
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~ 80 (582)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDF 80 (582)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 97787068999973999999999998538998699997989999708999877998717888999989999999985368
Q ss_pred CH----------------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHH---------CCHHHHH
Q ss_conf 94----------------7888604712341899425765545444345022287531201110---------0000000
Q gi|254780842|r 59 VW----------------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPN---------HVLMESF 113 (384)
Q Consensus 59 l~----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r---------~~L~~~L 113 (384)
T Consensus 81 l~d~~lv~~l~~~a~~~v~~le~~Gv~f~r~-----~~G-------~~~~~~~g----Ghs~~R~~~~~d~tG~~i~~~l 144 (582)
T PRK06069 81 LADQDAVEVLVREAPEEIRFLDHWGVPWSRD-----PDG-------RISQRPFG----GMSFPRTTFAADKTGFYIMSTL 144 (582)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEC-----CCC-------CEEEEECC----CCCCCEEECCCCCCCHHHHHHH
T ss_conf 8889999999998999999999769971068-----999-------88752158----7034500036787539999999
Q ss_pred HHHHHHCCCCCCCC-EEEEEECCCCEEE---E-EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 12366479832342-0565302687178---9-8302320--12111235303754320
Q gi|254780842|r 114 AEKISQDPLIHCFD-ALANEIQIGEEEV---T-ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 114 ~~~~~~~~~~~~~~-~~v~~i~~~~~~v---~-v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
T Consensus 145 ~~~~~~~~gv~~~~~~~vt~Ll~~~g~v~Ga~~~d~~~G~~~~i~AkaVVlATGG~g~l 203 (582)
T PRK06069 145 YSRALRFDNIHFYHEHFVTSLIVENGVFKGVTAIDLRRGEFKVFQAKAGIIATGGAGRL 203 (582)
T ss_pred HHHHHHCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCC
T ss_conf 99998469948997789888874399899999997689829999825599898867546