HHsearch alignment for GI: 254780842 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.48 E-value=1.6e-07 Score=74.09 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=31.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
T Consensus 153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR 185 (517)
T TIGR01317 153 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 185 (517)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 689975675799999998535883899743678