HHsearch alignment for GI: 254780842 and conserved domain: TIGR01789
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=99.04 E-value=1.6e-08 Score=81.39 Aligned_cols=285 Identities=16% Similarity=0.197 Sum_probs=151.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCEE-----EECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 299997908999999999978--9859998288555578368-----887889999998899478886047123418994
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQDLRTT-----MLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~~~r~~-----~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWSffd~Dls~~qhawla~lv----------------~~~ 64 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWSFFDADLSDAQHAWLADLV----------------VYD 64 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHC----------------CCC
T ss_conf 9788727335789999875259872899984377668875301003666743577765340----------------132
Q ss_pred CCC-CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEE---CCCCCEEEEE
Q ss_conf 257-655454443450222875312011100000000123664798323420565302687178983---0232012111
Q gi|254780842|r 78 ITD-RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTIL---LSTGQQIVGQ 153 (384)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~---~~dg~~i~ad 153 (384)
T Consensus 65 WpgGYeVR-----Fp~~rrkL~taY~S~tStrf~e~l~q~fpe~s~--~~~r~a~~~~--Ad~V~L~PsqyG~g~~i~A~ 135 (392)
T TIGR01789 65 WPGGYEVR-----FPKRRRKLKTAYLSMTSTRFREELEQKFPERSV--LLDRKAVEVD--ADAVDLEPSQYGNGRVIRAR 135 (392)
T ss_pred CCCCCEEC-----CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEE--EECCEEEEEE--ECEEEECCCCCCCCCEEEEE
T ss_conf 88971333-----555543321022110017789999987687205--6401567766--07566265446896267640
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEE--------EEEE--CCCCCC---CCCCCCCCCCEEEE
Q ss_conf 2353037543200037873322224304787641147886117--------8872--278754---21000123201126
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGR--------CVEF--HKSLGT---ITQIPLRENFSSLV 220 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~--------a~~~--f~~~G~---~a~lP~~~~~~~iv 220 (384)
T Consensus 136 ~VID~Rg~~P~~~L~~GfQ--------~FlG~e~RL~~PHGl~~PiiMDATVdQ~~PhGnGGgYRFVY~LPL~~~~llI- 206 (392)
T TIGR01789 136 AVIDARGFKPSAALKVGFQ--------VFLGREVRLAEPHGLESPIIMDATVDQSDPHGNGGGYRFVYVLPLDAQELLI- 206 (392)
T ss_pred EEEECCCCCCCCCCCCCHH--------HHHCCCHHCCCCCCCCCCEEECCCHHHCCCCCCCCCEEEEEECCCCCCEEEE-
T ss_conf 2772588877721025323--------4423200015788888870425624211778798740278864798750136-
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEEEEECCCC-----CCCHHHHHCCCCEECCCCCCCCCHH
Q ss_conf 75075673245532234678877630---675467621110223202233-----4304565379421011001138445
Q gi|254780842|r 221 WIMESQEADFYYKLPVNEIARRLEQY---LYPVIGKIEVVTDVQIFQLSG-----MISHCFGKKRVVLVGEAAHALPPIC 292 (384)
Q Consensus 221 w~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~pl~~-----~~~~~~~~~rv~liGDAAH~~~P~~ 292 (384)
T Consensus 207 --EDTyY~D~-~~L~~~~l~qrI~~YA~a~gW~~~t~~r~-EqGvLPv~l~GD~sa~~~~~~~PG~a~~Glragl~HP~T 282 (392)
T TIGR01789 207 --EDTYYADD-AELDEEALRQRIDDYALAKGWQLATLVRE-EQGVLPVLLAGDSSAYVDKVDIPGLAIAGLRAGLVHPTT 282 (392)
T ss_pred --EEEEECCC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HCCCCCEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf --63000588-83878988547899986428610126765-358662301587301124778897401355302447741
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHH
Q ss_conf 65321121238999999852-579907---999999998
Q gi|254780842|r 293 GQGLNLSMRDVIILLNLFQS-EHMSFR---AIGNRYHAM 327 (384)
Q Consensus 293 GqG~n~ai~Da~~L~~~l~~-~~~~~~---~~l~~Y~~~ 327 (384)
T Consensus 283 gYslp~AV~~Ad~l~a~~aqrG~lss~~~~~~id~~ar~ 321 (392)
T TIGR01789 283 GYSLPVAVEVADALAARDAQRGALSSEDLREAIDSYARE 321 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 355789999999985201004556778999998765554