>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.

Probab=98.16 E-value=1.3e-05 Score=60.06 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=84.6 Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC---CEEEECHHHHHHHHHCCCHH-HHHHC-------CCCCCC Q ss_conf 2999979089999999999789-859998288555578---36888788999999889947-88860-------471234 Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRSFLQDL---RTTMLMGEGIDFLKEINVWD-FLQDI-------AEPVSS 72 (384) Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~~~~~~---r~~~l~~~s~~~L~~lGl~~-~l~~~-------~~~~~~ 72 (384) T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~ 80 (487) T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND 80 (487) T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC T ss_conf 96898427688999999986468763787057523226899772102356848885488899677889988863278887 Q ss_pred EEEEE--------CCCCCCCCCCCCCCCHHCCCCCCCCHHHH-----------CCHHHHHHHHHHHCC------CCCCCC Q ss_conf 18994--------25765545444345022287531201110-----------000000012366479------832342 Q gi|254780842|r 73 FRLVD--------ITDRLITAPDAIFHSSEIGLDAFGYNIPN-----------HVLMESFAEKISQDP------LIHCFD 127 (384) Q Consensus 73 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~i~r-----------~~L~~~L~~~~~~~~------~~~~~~ 127 (384) T Consensus 81 ~~L~~~la~~s~~a~~wl~d-~~~~~~l~~~-~~~GGhs~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gskDsnlv~~~~n 158 (487) T TIGR01813 81 PELVRTLAEESADAVDWLQD-CGVGFRLDDL-IQLGGHSVKRAHRPTGGAASGAEIVQKLSKKAKKEGSKDSNLVETRLN 158 (487) T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEECCHH-HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCC T ss_conf 89999999878899887764-2210001114-432787646430347887678401177788774337743211221006 Q ss_pred EEEEEECCCCEE----EEEE----CCCC---C---EEEEEEEEEECCCCC-C---CCCCCCC Q ss_conf 056530268717----8983----0232---0---121112353037543-2---0003787 Q gi|254780842|r 128 ALANEIQIGEEE----VTIL----LSTG---Q---QIVGQFLIGSDGRNS-S---VRRQMGY 171 (384) Q Consensus 128 ~~v~~i~~~~~~----v~v~----~~dg---~---~i~adlvVgADG~~S-~---vR~~l~~ 171 (384) T Consensus 159 ~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~~~~y~P 220 (487) T TIGR01813 159 SKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKELIKKYDP 220 (487) T ss_pred CCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHHHCH T ss_conf 72799998697118999962122588777787326755060689757613333899986180

HHsearch alignment for GI: 254780842 and conserved domain: TIGR01813