HHsearch alignment for GI: 254780842 and conserved domain: TIGR01988
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=100.00 E-value=0 Score=629.84 Aligned_cols=375 Identities=32% Similarity=0.510 Sum_probs=351.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-----CEEEEEECCCC------C----CCCCEEEECHHHHHHHHHCCCHHHHHH-CCC
Q ss_conf 2999979089999999999789-----85999828855------5----578368887889999998899478886-047
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-----FLTALVSPRSF------L----QDLRTTMLMGEGIDFLKEINVWDFLQD-IAE 68 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-----~~v~iiE~~~~------~----~~~r~~~l~~~s~~~L~~lGl~~~l~~-~~~ 68 (384)
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~ 80 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ 80 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 96888473889999999841863124731799605211442211258765522010107999999867964452012126
Q ss_pred CCCCEEEEECCCCCCCCC---CCCCCCHHCC--CCCCCCHHHHCCHHHHHHHHHHHCCC---CCCCCEEEEEECCC----
Q ss_conf 123418994257655454---4434502228--75312011100000000123664798---32342056530268----
Q gi|254780842|r 69 PVSSFRLVDITDRLITAP---DAIFHSSEIG--LDAFGYNIPNHVLMESFAEKISQDPL---IHCFDALANEIQIG---- 136 (384)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~g~~i~r~~L~~~L~~~~~~~~~---~~~~~~~v~~i~~~---- 136 (384)
T Consensus 81 p~~~~~V~D~~~~g-~~~~P~~~~F~~~~~~~~~~~LG~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (445)
T TIGR01988 81 PIRDIHVSDGGSFG-RAPHPAALHFDADEVGGPAEALGYVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSKN 159 (445)
T ss_pred CCCEEEEEECCCCC-CCCCCEEEEECHHHCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCC
T ss_conf 32048887267888-88886368744344178801123671188999999999996689647751672147740367756
Q ss_pred -CEEEEEECCCCCE---EEEEEEEEECCCCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCCCEEEEEECCC-CCCCCCC
Q ss_conf -7178983023201---211123530375432000378733222-243047876411478861178872278-7542100
Q gi|254780842|r 137 -EEEVTILLSTGQQ---IVGQFLIGSDGRNSSVRRQMGYGENKW-SYPQKALVLNFQHSMPHNGRCVEFHKS-LGTITQI 210 (384)
Q Consensus 137 -~~~v~v~~~dg~~---i~adlvVgADG~~S~vR~~l~~~~~~~-~y~~~~l~~~~~~~~~~~~~a~~~f~~-~G~~a~l 210 (384)
T Consensus 160 ~~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~vR~~~gI~~~~~R~Y~Q~a~Va~v~~~~~h~~~A~erF~~~~GP~AlL 239 (445)
T TIGR01988 160 DSDEVELTLSDGRQKLLLRARLLVGADGANSKVRQLAGIPTTGWRDYGQSAVVANVKHERPHQGTAWERFLPDTGPLALL 239 (445)
T ss_pred CCCCEEEEECCCCEEEEEEECEEEEECCCCHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCEEEEEEECCCCCEEEC
T ss_conf 88607999708947678985327873586525799718884301164553899999714788964799982799857873
Q ss_pred CCCC---CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------------------CCCCCEE
Q ss_conf 0123---20112675075673245532234678877630675467----------------------------6211102
Q gi|254780842|r 211 PLRE---NFSSLVWIMESQEADFYYKLPVNEIARRLEQYLYPVIG----------------------------KIEVVTD 259 (384)
Q Consensus 211 P~~~---~~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------~~~~~~~ 259 (384)
T Consensus 240 PL~~~dd~~~slVW~~~~~~A~~L~~l~~~~F~~~L~~~F~~~lG~~~~~~~~~~~l~~~~~~~~~~~~pp~~~~~~~~~ 319 (445)
T TIGR01988 240 PLPDNDDNRSSLVWTLPPEEAERLLALDDEEFLAELNRAFGSRLGDLPYLDQTDFALNELFFRSSEEQYPPLGAITLVGE 319 (445)
T ss_pred CCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCEEEEECCC
T ss_conf 58888896038997389799999867899899999999853315796556789999999873202440068237887687
Q ss_pred EEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 232022334304565379421011001138445653211212389999998525-----799079999999986799999
Q gi|254780842|r 260 VQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE-----HMSFRAIGNRYHAMRRGDIIK 334 (384)
Q Consensus 260 ~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~-----~~~~~~~l~~Y~~~R~~~~~~ 334 (384)
T Consensus 320 R~~fPL~~~~A~~yv~~R~aLiGDAAHt~HPlAGQG~NLG~rDv~~La~~l~~a~~~g~DiG~~~~L~~Y~r~R~~dn~~ 399 (445)
T TIGR01988 320 RAAFPLSLRHAKRYVAPRLALIGDAAHTVHPLAGQGLNLGLRDVAALAEVLVEARRRGEDIGSLAVLQRYERRRRFDNAA 399 (445)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 63044033435876259858980541357871001002007899999999999884566857777899999974998999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 9999999999863679899999999999985083789999998619
Q gi|254780842|r 335 RIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLF 380 (384)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~g 380 (384)
T Consensus 400 ~~~~~D~L~~lF~n~~~pl~~lR~~GL~~~~~~pplK~~~~~~a~G 445 (445)
T TIGR01988 400 MLGATDGLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARQAMG 445 (445)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 9999999998740687789999989999874040589999998529