HHsearch alignment for GI: 254780842 and conserved domain: TIGR02028
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=99.85 E-value=5.6e-20 Score=165.62 Aligned_cols=318 Identities=17% Similarity=0.180 Sum_probs=199.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 99997908999999999978985999828855557836888788999999889947888604712341899425765545
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITA 85 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (384)
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGGAIP---LCMv~EF~lP~d~iD--RRV~kMk~~SPSN~~~d~ 77 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGGAIP---LCMVDEFDLPRDIID--RRVTKMKMISPSNIAVDI 77 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC---CCCCCHHCCCHHHHH--CCCCEEEEECCCCHHHHH
T ss_conf 889748974168999998503104633205678877888644---120101037866751--211022421641013320
Q ss_pred CCCCCCCHHCC-CCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE----EEEEE--CCCCC--------EE
Q ss_conf 44434502228-753120111000000001236647983234205653026871----78983--02320--------12
Q gi|254780842|r 86 PDAIFHSSEIG-LDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE----EVTIL--LSTGQ--------QI 150 (384)
Q Consensus 86 ~~~~~~~~~~~-~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~----~v~v~--~~dg~--------~i 150 (384)
T Consensus 78 gr------~L~~~~yIg-M~RREVLDsflR~RA~~~GA~-li~Glv~~l~~P~~p~~~PY~lHY~~~Dg~~G~~g~~~~l 149 (401)
T TIGR02028 78 GR------TLKEHEYIG-MVRREVLDSFLRERAADAGAT-LINGLVLKLELPADPADDPYTLHYVEEDGKGGASGTKKTL 149 (401)
T ss_pred HC------CCCCCCCCC-CHHHHHHHHHHHHHHHHCCCE-EECCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 00------278876125-145788889999999864881-4144457631778887787178987006875876454068
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEE-----EC-----CCCCCCCCCCCCCCCEEE-
Q ss_conf 1112353037543200037873322224304787641147886117887-----22-----787542100012320112-
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVE-----FH-----KSLGTITQIPLRENFSSL- 219 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~-----~f-----~~~G~~a~lP~~~~~~~i- 219 (384)
T Consensus 150 EVD~VIGADGANSRvAk~idAG----DY~-~AIAfQERIRlPde~MaYY~dLAEMYVGdDVSPDFYgWVFPK~DH-VAVG 223 (401)
T TIGR02028 150 EVDAVIGADGANSRVAKEIDAG----DYD-YAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVG 223 (401)
T ss_pred EEEEEECCCCCCCHHHCCCCCC----CHH-HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE-EEEC
T ss_conf 8877870787520231113788----523-444433203687011234664333200788686634010677364-7733
Q ss_pred EEE--ECHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHH
Q ss_conf 675--07567324553223467887763067546-762111022320223343045653794210110011384456532
Q gi|254780842|r 220 VWI--MESQEADFYYKLPVNEIARRLEQYLYPVI-GKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGL 296 (384)
Q Consensus 220 vw~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~ 296 (384)
T Consensus 224 TGTvk~~K~~Ik~lQ~g~R----~RA~~---K~~GG~---iirVEAHPIPEHPRPRRv~~RVALVGDAAG~VTkcSGEGI 293 (401)
T TIGR02028 224 TGTVKAAKDEIKKLQSGIR----ARAAD---KVAGGK---IIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGI 293 (401)
T ss_pred CCEEEECCHHHHHHHHHHH----HHHHH---HHCCCE---EEEEECCCCCCCCCCCEECCEEEEEECCCCCEEECCCCHH
T ss_conf 5314505078899988887----87886---604880---8998134775424885001205776336675350036505
Q ss_pred HHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 112123899999985257990-----79999999986799999999999999986367989
Q gi|254780842|r 297 NLSMRDVIILLNLFQSEHMSF-----RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPL 352 (384)
Q Consensus 297 n~ai~Da~~L~~~l~~~~~~~-----~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~ 352 (384)
T Consensus 294 YFAAkSgR~Ca~a~~~~~~~g~~~~~~g~~~~YL~rWD~~y~~Ty~~LDlLQrVFYrs~a~ 354 (401)
T TIGR02028 294 YFAAKSGRLCAEAIVEESRLGKKVTEEGDLKKYLKRWDKEYRPTYRVLDLLQRVFYRSNAA 354 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 4665444568899886430364013467889998876553142656666776543278840