HHsearch alignment for GI: 254780842 and conserved domain: TIGR02028

>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=99.85  E-value=5.6e-20  Score=165.62  Aligned_cols=318  Identities=17%  Similarity=0.180  Sum_probs=199.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf             99997908999999999978985999828855557836888788999999889947888604712341899425765545
Q gi|254780842|r    6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITA   85 (384)
Q Consensus         6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (384)
T Consensus         3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGGAIP---LCMv~EF~lP~d~iD--RRV~kMk~~SPSN~~~d~   77 (401)
T TIGR02028         3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGGAIP---LCMVDEFDLPRDIID--RRVTKMKMISPSNIAVDI   77 (401)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC---CCCCCHHCCCHHHHH--CCCCEEEEECCCCHHHHH
T ss_conf             889748974168999998503104633205678877888644---120101037866751--211022421641013320


Q ss_pred             CCCCCCCHHCC-CCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE----EEEEE--CCCCC--------EE
Q ss_conf             44434502228-753120111000000001236647983234205653026871----78983--02320--------12
Q gi|254780842|r   86 PDAIFHSSEIG-LDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE----EVTIL--LSTGQ--------QI  150 (384)
Q Consensus        86 ~~~~~~~~~~~-~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~----~v~v~--~~dg~--------~i  150 (384)
T Consensus        78 gr------~L~~~~yIg-M~RREVLDsflR~RA~~~GA~-li~Glv~~l~~P~~p~~~PY~lHY~~~Dg~~G~~g~~~~l  149 (401)
T TIGR02028        78 GR------TLKEHEYIG-MVRREVLDSFLRERAADAGAT-LINGLVLKLELPADPADDPYTLHYVEEDGKGGASGTKKTL  149 (401)
T ss_pred             HC------CCCCCCCCC-CHHHHHHHHHHHHHHHHCCCE-EECCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf             00------278876125-145788889999999864881-4144457631778887787178987006875876454068


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEE-----EC-----CCCCCCCCCCCCCCCEEE-
Q ss_conf             1112353037543200037873322224304787641147886117887-----22-----787542100012320112-
Q gi|254780842|r  151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVE-----FH-----KSLGTITQIPLRENFSSL-  219 (384)
Q Consensus       151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~-----~f-----~~~G~~a~lP~~~~~~~i-  219 (384)
T Consensus       150 EVD~VIGADGANSRvAk~idAG----DY~-~AIAfQERIRlPde~MaYY~dLAEMYVGdDVSPDFYgWVFPK~DH-VAVG  223 (401)
T TIGR02028       150 EVDAVIGADGANSRVAKEIDAG----DYD-YAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVG  223 (401)
T ss_pred             EEEEEECCCCCCCHHHCCCCCC----CHH-HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE-EEEC
T ss_conf             8877870787520231113788----523-444433203687011234664333200788686634010677364-7733


Q ss_pred             EEE--ECHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHH
Q ss_conf             675--07567324553223467887763067546-762111022320223343045653794210110011384456532
Q gi|254780842|r  220 VWI--MESQEADFYYKLPVNEIARRLEQYLYPVI-GKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGL  296 (384)
Q Consensus       220 vw~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~  296 (384)
T Consensus       224 TGTvk~~K~~Ik~lQ~g~R----~RA~~---K~~GG~---iirVEAHPIPEHPRPRRv~~RVALVGDAAG~VTkcSGEGI  293 (401)
T TIGR02028       224 TGTVKAAKDEIKKLQSGIR----ARAAD---KVAGGK---IIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGI  293 (401)
T ss_pred             CCEEEECCHHHHHHHHHHH----HHHHH---HHCCCE---EEEEECCCCCCCCCCCEECCEEEEEECCCCCEEECCCCHH
T ss_conf             5314505078899988887----87886---604880---8998134775424885001205776336675350036505


Q ss_pred             HHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             112123899999985257990-----79999999986799999999999999986367989
Q gi|254780842|r  297 NLSMRDVIILLNLFQSEHMSF-----RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPL  352 (384)
Q Consensus       297 n~ai~Da~~L~~~l~~~~~~~-----~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~  352 (384)
T Consensus       294 YFAAkSgR~Ca~a~~~~~~~g~~~~~~g~~~~YL~rWD~~y~~Ty~~LDlLQrVFYrs~a~  354 (401)
T TIGR02028       294 YFAAKSGRLCAEAIVEESRLGKKVTEEGDLKKYLKRWDKEYRPTYRVLDLLQRVFYRSNAA  354 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf             4665444568899886430364013467889998876553142656666776543278840