HHsearch alignment for GI: 254780842 and conserved domain: TIGR02730
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.44 E-value=0.00013 Score=52.81 Aligned_cols=187 Identities=18% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE-EEEECCCCCEEEEEEEEEE-----------CCCCCCCCCCC---CC
Q ss_conf 000000012366479832342056530268717-8983023201211123530-----------37543200037---87
Q gi|254780842|r 107 HVLMESFAEKISQDPLIHCFDALANEIQIGEEE-VTILLSTGQQIVGQFLIGS-----------DGRNSSVRRQM---GY 171 (384)
Q Consensus 107 ~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-v~v~~~dg~~i~adlvVgA-----------DG~~S~vR~~l---~~ 171 (384)
T Consensus 229 G~IA~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~~~AvGV~L~~G~~~~~k~ivSNATRWDTF~g~~~g~~~~g~~L~~~~~~ 308 (506)
T TIGR02730 229 GQIAEKLVKGLEKHGGKIRYKARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGGQDDGSTRAGQKLLKEENL 308 (506)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 48999999888741640563002455452088455568648836521167631642345677643113566764200258
Q ss_pred CCCCCC----CCE--EEEEEE--ECCCCCCCE-EE--------EE-ECCCCCCC-CCCCC-------CCCCEEEEEEECH
Q ss_conf 332222----430--478764--114788611-78--------87-22787542-10001-------2320112675075
Q gi|254780842|r 172 GENKWS----YPQ--KALVLN--FQHSMPHNG-RC--------VE-FHKSLGTI-TQIPL-------RENFSSLVWIMES 225 (384)
Q Consensus 172 ~~~~~~----y~~--~~l~~~--~~~~~~~~~-~a--------~~-~f~~~G~~-a~lP~-------~~~~~~ivw~~~~ 225 (384)
T Consensus 309 P~~E~~w~~~Y~~sPSFLSlHlGV~~d~lP~gT~CHH~~LEDdW~~l~~~~G~iFvSiPtlLDp~LAP~G~-HI~H~FTp 387 (506)
T TIGR02730 309 PKKEKKWRRNYVKSPSFLSLHLGVKADVLPEGTECHHILLEDDWDNLEKEQGTIFVSIPTLLDPSLAPEGY-HIIHTFTP 387 (506)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEECCCCCCCCCCCCCC-EEEEEECC
T ss_conf 63478999851378860330004200147888961378852670200678866999722202730277984-79985062
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHH-CCCCCCCCCC--CCEEEE-----------EE-CCCCCCC--------H
Q ss_conf 6732455322346-----------7887763-0675467621--110223-----------20-2233430--------4
Q gi|254780842|r 226 QEADFYYKLPVNE-----------IARRLEQ-YLYPVIGKIE--VVTDVQ-----------IF-QLSGMIS--------H 271 (384)
Q Consensus 226 ~~~~~~~~~~~~~-----------~~~~l~~-~~~~~~~~~~--~~~~~~-----------~~-pl~~~~~--------~ 271 (384)
T Consensus 388 s~~e~W~gLSp~dY~AKKE~~a~r~I~RLE~~ifPGL~~~~~~~EvGTPr~HRRfLgR~~GtYGPiPr~~l~GLL~MPFN 467 (506)
T TIGR02730 388 SSLEDWQGLSPKDYEAKKEADAERLIDRLEKTIFPGLDEALDYKEVGTPRTHRRFLGRESGTYGPIPRRKLKGLLPMPFN 467 (506)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 02655317884243323177899999987664065602415433247886202212568788588887778877658851
Q ss_pred HHHHCCCCEECCCCCCCCCHHHHHHHHH
Q ss_conf 5653794210110011384456532112
Q gi|254780842|r 272 CFGKKRVVLVGEAAHALPPICGQGLNLS 299 (384)
Q Consensus 272 ~~~~~rv~liGDAAH~~~P~~GqG~n~a 299 (384)
T Consensus 468 ~Tai~gLYCVGDS~F-----PGQGl~AV 490 (506)
T TIGR02730 468 RTAIPGLYCVGDSCF-----PGQGLNAV 490 (506)
T ss_pred CCCCCCCEEECCCCC-----CCCCHHHH
T ss_conf 003576155046578-----87533676