HHsearch alignment for GI: 254780842 and conserved domain: TIGR02730

>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.44  E-value=0.00013  Score=52.81  Aligned_cols=187  Identities=18%  Similarity=0.306  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE-EEEECCCCCEEEEEEEEEE-----------CCCCCCCCCCC---CC
Q ss_conf             000000012366479832342056530268717-8983023201211123530-----------37543200037---87
Q gi|254780842|r  107 HVLMESFAEKISQDPLIHCFDALANEIQIGEEE-VTILLSTGQQIVGQFLIGS-----------DGRNSSVRRQM---GY  171 (384)
Q Consensus       107 ~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-v~v~~~dg~~i~adlvVgA-----------DG~~S~vR~~l---~~  171 (384)
T Consensus       229 G~IA~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~~~AvGV~L~~G~~~~~k~ivSNATRWDTF~g~~~g~~~~g~~L~~~~~~  308 (506)
T TIGR02730       229 GQIAEKLVKGLEKHGGKIRYKARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGGQDDGSTRAGQKLLKEENL  308 (506)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             48999999888741640563002455452088455568648836521167631642345677643113566764200258


Q ss_pred             CCCCCC----CCE--EEEEEE--ECCCCCCCE-EE--------EE-ECCCCCCC-CCCCC-------CCCCEEEEEEECH
Q ss_conf             332222----430--478764--114788611-78--------87-22787542-10001-------2320112675075
Q gi|254780842|r  172 GENKWS----YPQ--KALVLN--FQHSMPHNG-RC--------VE-FHKSLGTI-TQIPL-------RENFSSLVWIMES  225 (384)
Q Consensus       172 ~~~~~~----y~~--~~l~~~--~~~~~~~~~-~a--------~~-~f~~~G~~-a~lP~-------~~~~~~ivw~~~~  225 (384)
T Consensus       309 P~~E~~w~~~Y~~sPSFLSlHlGV~~d~lP~gT~CHH~~LEDdW~~l~~~~G~iFvSiPtlLDp~LAP~G~-HI~H~FTp  387 (506)
T TIGR02730       309 PKKEKKWRRNYVKSPSFLSLHLGVKADVLPEGTECHHILLEDDWDNLEKEQGTIFVSIPTLLDPSLAPEGY-HIIHTFTP  387 (506)
T ss_pred             CHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEECCCCCCCCCCCCCC-EEEEEECC
T ss_conf             63478999851378860330004200147888961378852670200678866999722202730277984-79985062


Q ss_pred             HHHHHHHHHHHHH-----------HHHHHHH-CCCCCCCCCC--CCEEEE-----------EE-CCCCCCC--------H
Q ss_conf             6732455322346-----------7887763-0675467621--110223-----------20-2233430--------4
Q gi|254780842|r  226 QEADFYYKLPVNE-----------IARRLEQ-YLYPVIGKIE--VVTDVQ-----------IF-QLSGMIS--------H  271 (384)
Q Consensus       226 ~~~~~~~~~~~~~-----------~~~~l~~-~~~~~~~~~~--~~~~~~-----------~~-pl~~~~~--------~  271 (384)
T Consensus       388 s~~e~W~gLSp~dY~AKKE~~a~r~I~RLE~~ifPGL~~~~~~~EvGTPr~HRRfLgR~~GtYGPiPr~~l~GLL~MPFN  467 (506)
T TIGR02730       388 SSLEDWQGLSPKDYEAKKEADAERLIDRLEKTIFPGLDEALDYKEVGTPRTHRRFLGRESGTYGPIPRRKLKGLLPMPFN  467 (506)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             02655317884243323177899999987664065602415433247886202212568788588887778877658851


Q ss_pred             HHHHCCCCEECCCCCCCCCHHHHHHHHH
Q ss_conf             5653794210110011384456532112
Q gi|254780842|r  272 CFGKKRVVLVGEAAHALPPICGQGLNLS  299 (384)
Q Consensus       272 ~~~~~rv~liGDAAH~~~P~~GqG~n~a  299 (384)
T Consensus       468 ~Tai~gLYCVGDS~F-----PGQGl~AV  490 (506)
T TIGR02730       468 RTAIPGLYCVGDSCF-----PGQGLNAV  490 (506)
T ss_pred             CCCCCCCEEECCCCC-----CCCCHHHH
T ss_conf             003576155046578-----87533676