HHsearch alignment for GI: 254780842 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.11 E-value=9.7e-10 Score=90.41 Aligned_cols=123 Identities=26% Similarity=0.368 Sum_probs=86.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 97002999979089999999999789859998288555578368887889999998899478886047123418994257
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD 80 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (384)
T Consensus 210 ~~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~----G--Gqv~-------~t----~~I-------eN-------- 257 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI----G--GQVK-------DT----VGI-------EN-------- 257 (515)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----C--CCCE-------EC----CCE-------EE--------
T ss_conf 788888998967899999999997799769992487----7--5313-------03----460-------04--------
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 65545444345022287531201110000000012366479832342056530268717898302320121112353037
Q gi|254780842|r 81 RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDG 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG 160 (384)
T Consensus 258 -------------ypG~~~----i~G~eL~~~~~~qa~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATG 320 (515)
T TIGR03140 258 -------------LISVPY----TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATG 320 (515)
T ss_pred -------------CCCCCC----CCHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCEEEEECCCCEEEECEEEECCC
T ss_conf -------------489877----757999999999999749689913369999727981899987998999397999569
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 543200037873322
Q gi|254780842|r 161 RNSSVRRQMGYGENK 175 (384)
Q Consensus 161 ~~S~vR~~l~~~~~~ 175 (384)
T Consensus 321 a~~---r~l~vpGE~ 332 (515)
T TIGR03140 321 ARW---RKLGVPGEK 332 (515)
T ss_pred CCC---CCCCCCCHH
T ss_conf 873---558999678