HHsearch alignment for GI: 254780842 and conserved domain: pfam01494

>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=100.00  E-value=0  Score=374.48  Aligned_cols=330  Identities=20%  Similarity=0.182  Sum_probs=234.6

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             0029999790899999999997898599982885555-783688878899999988994788860471234189942576
Q gi|254780842|r    3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR   81 (384)
Q Consensus         3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   81 (384)
T Consensus         1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~   80 (349)
T pfam01494         1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAEGAPHEGMGLAFYNTS   80 (349)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCC
T ss_conf             99789999288999999999877998999928999887877999898999999987986899850687510599983786


Q ss_pred             CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC-----CEEEEEEEE
Q ss_conf             554544434502228753120111000000001236647983234205653026871789830232-----012111235
Q gi|254780842|r   82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG-----QQIVGQFLI  156 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg-----~~i~adlvV  156 (384)
T Consensus        81 ~~~~-~~~~---~-~~~~~~~~~~r~~l~~~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvI  155 (349)
T pfam01494        81 RRRA-DLDF---L-TSPPRVTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLV  155 (349)
T ss_pred             CCEE-ECCC---C-CCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEE
T ss_conf             4222-0145---5-677626886299999999999985799899661787752059943799984589955899976884


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCEEEEEEEECC----CCC---CCEEEEEECCCCCCCCCCCCCCCCEE-EEEEEC--HH
Q ss_conf             303754320003787332222430478764114----788---61178872278754210001232011-267507--56
Q gi|254780842|r  157 GSDGRNSSVRRQMGYGENKWSYPQKALVLNFQH----SMP---HNGRCVEFHKSLGTITQIPLRENFSS-LVWIME--SQ  226 (384)
Q Consensus       157 gADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~----~~~---~~~~a~~~f~~~G~~a~lP~~~~~~~-ivw~~~--~~  226 (384)
T Consensus       156 gADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  235 (349)
T pfam01494       156 GCDGGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRSRYYVQVPWDPE  235 (349)
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCC
T ss_conf             15777648999759997555454389999995257842123567428999718998699997279982799999707854


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             73245532234678877630675467621110223202233430456537942101100113844565321121238999
Q gi|254780842|r  227 EADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIIL  306 (384)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L  306 (384)
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~L  314 (349)
T pfam01494       236 VEERPEEFTDEEAKQRLRSAVGIDLAD-VEILWKSIWGVRSRVATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNL  314 (349)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             222544389999999999864865455-5635578620035673551159899998610238863546775899999999


Q ss_pred             HHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998525--7990799999999867999999999
Q gi|254780842|r  307 LNLFQSE--HMSFRAIGNRYHAMRRGDIIKRIVG  338 (384)
Q Consensus       307 ~~~l~~~--~~~~~~~l~~Y~~~R~~~~~~~~~~  338 (384)
T Consensus       315 a~~L~~~~~g~~~~~~L~~Ye~~R~~~~~~~~~~  348 (349)
T pfam01494       315 AWKLAAVLRGTAGEALLDTYEAERRPVAWAVVDF  348 (349)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999749998899999999999999999850