HHsearch alignment for GI: 254780842 and conserved domain: pfam01494
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=100.00 E-value=0 Score=374.48 Aligned_cols=330 Identities=20% Similarity=0.182 Sum_probs=234.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 0029999790899999999997898599982885555-783688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 80 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAEGAPHEGMGLAFYNTS 80 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99789999288999999999877998999928999887877999898999999987986899850687510599983786
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC-----CEEEEEEEE
Q ss_conf 554544434502228753120111000000001236647983234205653026871789830232-----012111235
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG-----QQIVGQFLI 156 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg-----~~i~adlvV 156 (384)
T Consensus 81 ~~~~-~~~~---~-~~~~~~~~~~r~~l~~~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvI 155 (349)
T pfam01494 81 RRRA-DLDF---L-TSPPRVTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLV 155 (349)
T ss_pred CCEE-ECCC---C-CCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEE
T ss_conf 4222-0145---5-677626886299999999999985799899661787752059943799984589955899976884
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEEECC----CCC---CCEEEEEECCCCCCCCCCCCCCCCEE-EEEEEC--HH
Q ss_conf 303754320003787332222430478764114----788---61178872278754210001232011-267507--56
Q gi|254780842|r 157 GSDGRNSSVRRQMGYGENKWSYPQKALVLNFQH----SMP---HNGRCVEFHKSLGTITQIPLRENFSS-LVWIME--SQ 226 (384)
Q Consensus 157 gADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~----~~~---~~~~a~~~f~~~G~~a~lP~~~~~~~-ivw~~~--~~ 226 (384)
T Consensus 156 gADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 235 (349)
T pfam01494 156 GCDGGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRSRYYVQVPWDPE 235 (349)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 15777648999759997555454389999995257842123567428999718998699997279982799999707854
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 73245532234678877630675467621110223202233430456537942101100113844565321121238999
Q gi|254780842|r 227 EADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIIL 306 (384)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L 306 (384)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~L 314 (349)
T pfam01494 236 VEERPEEFTDEEAKQRLRSAVGIDLAD-VEILWKSIWGVRSRVATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNL 314 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 222544389999999999864865455-5635578620035673551159899998610238863546775899999999
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998525--7990799999999867999999999
Q gi|254780842|r 307 LNLFQSE--HMSFRAIGNRYHAMRRGDIIKRIVG 338 (384)
Q Consensus 307 ~~~l~~~--~~~~~~~l~~Y~~~R~~~~~~~~~~ 338 (384)
T Consensus 315 a~~L~~~~~g~~~~~~L~~Ye~~R~~~~~~~~~~ 348 (349)
T pfam01494 315 AWKLAAVLRGTAGEALLDTYEAERRPVAWAVVDF 348 (349)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999749998899999999999999999850