HHsearch alignment for GI: 254780842 and conserved domain: pfam05834
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.82 E-value=2.2e-17 Score=146.63 Aligned_cols=277 Identities=15% Similarity=0.147 Sum_probs=168.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCC--CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 299997908999999999978--9859998288555--578368887889999998899478886047123418994257
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFL--QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD 80 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~--~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (384)
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~------~~~~~~~~~~~~--~W~~~~v~~~~~ 72 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEF------EDLGPLAPCVEH--SWPGYEVRFPDG 72 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCC------CCCCCHHHHHHC--EECCEEEEECCC
T ss_conf 989999529999999999740899819999789888889983854571------787775777645--879679992899
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 65545444345022287531201110000000012366479832342056530268717898302320121112353037
Q gi|254780842|r 81 RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDG 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG 160 (384)
T Consensus 73 ~~------~l--~~--~~-Y-~~i~s~~f~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~V~Dsr~ 139 (374)
T pfam05834 73 RR------KL--IG--RG-Y-GRVSSDRLHEELLRRCAENGVI-RLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARG 139 (374)
T ss_pred CE------EE--CC--CC-C-EEEEHHHHHHHHHHHHHHCCCE-EECCEEEEEECCCCCEEEEECCCCEEEEEEEEECCC
T ss_conf 74------76--68--87-0-7988899999999998657969-991377897537870599926995874449994787
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC--EEEEE-EC----CCCCC--CCCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 5432000378733222243047876411478861--17887-22----78754--2100012320112675075673245
Q gi|254780842|r 161 RNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHN--GRCVE-FH----KSLGT--ITQIPLRENFSSLVWIMESQEADFY 231 (384)
Q Consensus 161 ~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~--~~a~~-~f----~~~G~--~a~lP~~~~~~~ivw~~~~~~~~~~ 231 (384)
T Consensus 140 ~~~~~~~~--------~l~Q~F~G~~I~t~~~~fd~~~~~lMDfr~~q~~~g~~F~YvLP~s~~~aLVE~T~fs~~---- 207 (374)
T pfam05834 140 ASPSGALT--------VGYQTFYGVEVEVDNPPHDPDVPVIMDARVPQPAKGYRFLYVLPLSPTRLLIEDTCYADG---- 207 (374)
T ss_pred CCCCCCCC--------CEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCC----
T ss_conf 66778888--------614899999999689978887259998326666676189999754898599998753367----
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCCCC-CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5322346788776306754-67621-110223202233430456537942101100113844565321121238999999
Q gi|254780842|r 232 YKLPVNEIARRLEQYLYPV-IGKIE-VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL 309 (384)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~ 309 (384)
T Consensus 208 ~~l~~~~~~~~i~~yl~~~gi~~~~i~~~E~GviPm~~~~~~~~~~~~ii~iG~agG~~~psTGYsf~~~~~~a~~ia~~ 287 (374)
T pfam05834 208 PALPFDALKQRLMDYARALGWRILEVEREEQGVIPMTLGGDLPATWQKVLRIGAAAGLVHPSTGYSVPRALALAPAIAAI 287 (374)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999729985237754889988866888655687762223243788887036299999989999987
Q ss_pred HHCCC
Q ss_conf 85257
Q gi|254780842|r 310 FQSEH 314 (384)
Q Consensus 310 l~~~~ 314 (384)
T Consensus 288 l~~~~ 292 (374)
T pfam05834 288 LRLSS 292 (374)
T ss_pred HHCCC
T ss_conf 64278