HHsearch alignment for GI: 254780842 and conserved domain: pfam05834

>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.82  E-value=2.2e-17  Score=146.63  Aligned_cols=277  Identities=15%  Similarity=0.147  Sum_probs=168.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCC--CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf             299997908999999999978--9859998288555--578368887889999998899478886047123418994257
Q gi|254780842|r    5 DVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFL--QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD   80 (384)
Q Consensus         5 DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~--~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   80 (384)
T Consensus         1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~------~~~~~~~~~~~~--~W~~~~v~~~~~   72 (374)
T pfam05834         1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEF------EDLGPLAPCVEH--SWPGYEVRFPDG   72 (374)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCC------CCCCCHHHHHHC--EECCEEEEECCC
T ss_conf             989999529999999999740899819999789888889983854571------787775777645--879679992899


Q ss_pred             CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECC
Q ss_conf             65545444345022287531201110000000012366479832342056530268717898302320121112353037
Q gi|254780842|r   81 RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDG  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG  160 (384)
T Consensus        73 ~~------~l--~~--~~-Y-~~i~s~~f~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~V~Dsr~  139 (374)
T pfam05834        73 RR------KL--IG--RG-Y-GRVSSDRLHEELLRRCAENGVI-RLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARG  139 (374)
T ss_pred             CE------EE--CC--CC-C-EEEEHHHHHHHHHHHHHHCCCE-EECCEEEEEECCCCCEEEEECCCCEEEEEEEEECCC
T ss_conf             74------76--68--87-0-7988899999999998657969-991377897537870599926995874449994787


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC--EEEEE-EC----CCCCC--CCCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf             5432000378733222243047876411478861--17887-22----78754--2100012320112675075673245
Q gi|254780842|r  161 RNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHN--GRCVE-FH----KSLGT--ITQIPLRENFSSLVWIMESQEADFY  231 (384)
Q Consensus       161 ~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~--~~a~~-~f----~~~G~--~a~lP~~~~~~~ivw~~~~~~~~~~  231 (384)
T Consensus       140 ~~~~~~~~--------~l~Q~F~G~~I~t~~~~fd~~~~~lMDfr~~q~~~g~~F~YvLP~s~~~aLVE~T~fs~~----  207 (374)
T pfam05834       140 ASPSGALT--------VGYQTFYGVEVEVDNPPHDPDVPVIMDARVPQPAKGYRFLYVLPLSPTRLLIEDTCYADG----  207 (374)
T ss_pred             CCCCCCCC--------CEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCC----
T ss_conf             66778888--------614899999999689978887259998326666676189999754898599998753367----


Q ss_pred             HHHHHHHHHHHHHHCCCCC-CCCCC-CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             5322346788776306754-67621-110223202233430456537942101100113844565321121238999999
Q gi|254780842|r  232 YKLPVNEIARRLEQYLYPV-IGKIE-VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL  309 (384)
Q Consensus       232 ~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~  309 (384)
T Consensus       208 ~~l~~~~~~~~i~~yl~~~gi~~~~i~~~E~GviPm~~~~~~~~~~~~ii~iG~agG~~~psTGYsf~~~~~~a~~ia~~  287 (374)
T pfam05834       208 PALPFDALKQRLMDYARALGWRILEVEREEQGVIPMTLGGDLPATWQKVLRIGAAAGLVHPSTGYSVPRALALAPAIAAI  287 (374)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             78999999999999999729985237754889988866888655687762223243788887036299999989999987


Q ss_pred             HHCCC
Q ss_conf             85257
Q gi|254780842|r  310 FQSEH  314 (384)
Q Consensus       310 l~~~~  314 (384)
T Consensus       288 l~~~~  292 (374)
T pfam05834       288 LRLSS  292 (374)
T ss_pred             HHCCC
T ss_conf             64278