HHsearch alignment for GI: 254780842 and conserved domain: pfam06039

>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.32  E-value=6.4e-06  Score=62.34  Aligned_cols=171  Identities=15%  Similarity=0.226  Sum_probs=90.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCC--------CCCEEE-------ECHH----------HHHH-
Q ss_conf             700299997908999999999978--98599982885555--------783688-------8788----------9999-
Q gi|254780842|r    2 NHFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQ--------DLRTTM-------LMGE----------GIDF-   53 (384)
Q Consensus         2 ~~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~--------~~r~~~-------l~~~----------s~~~-   53 (384)
T Consensus         3 ~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~In   82 (489)
T pfam06039         3 DKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKIN   82 (489)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             61029999962889999999997599874899981475255507886655210002134148876568844279999999


Q ss_pred             ------------HHHCCCHHHHHHCCCCCCCEEEEECCCCCC-------------CCCCCCCC--CHHC-----------
Q ss_conf             ------------998899478886047123418994257655-------------45444345--0222-----------
Q gi|254780842|r   54 ------------LKEINVWDFLQDIAEPVSSFRLVDITDRLI-------------TAPDAIFH--SSEI-----------   95 (384)
Q Consensus        54 ------------L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~-----------   95 (384)
T Consensus        83 eqFe~Srqfws~lv~~g~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~~i~~w~PLv~~gR  162 (489)
T pfam06039        83 EQFQISRQFWAYLVKEGVLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPEKIKEWVPLMMEGR  162 (489)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCCC
T ss_conf             99999999999998758989857850568815898776988999999998505878677784479899986448003797


Q ss_pred             -CCCC-------CCCHHHHCCHHHHHHHHHHHCCCC-CCCCEEEEEECCCCEE-EEEECC---CC--CEEEEEEEEEECC
Q ss_conf             -8753-------120111000000001236647983-2342056530268717-898302---32--0121112353037
Q gi|254780842|r   96 -GLDA-------FGYNIPNHVLMESFAEKISQDPLI-HCFDALANEIQIGEEE-VTILLS---TG--QQIVGQFLIGSDG  160 (384)
Q Consensus        96 -~~~~-------~g~~i~r~~L~~~L~~~~~~~~~~-~~~~~~v~~i~~~~~~-v~v~~~---dg--~~i~adlvVgADG  160 (384)
T Consensus       163 ~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAG  242 (489)
T pfam06039       163 DPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAG  242 (489)
T ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCC
T ss_conf             97885579944887401189999999999851898289927885345888999879999865789748998267998887


Q ss_pred             CCCC-CCCCCCCC
Q ss_conf             5432-00037873
Q gi|254780842|r  161 RNSS-VRRQMGYG  172 (384)
Q Consensus       161 ~~S~-vR~~l~~~  172 (384)
T Consensus       243 G~sL~LlQksgi~  255 (489)
T pfam06039       243 GGALPLLQKSGIP  255 (489)
T ss_pred             HHHHHHHHHCCCH
T ss_conf             5778999981983