HHsearch alignment for GI: 254780842 and conserved domain: pfam08491
>pfam08491 SE Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.
Probab=99.59 E-value=8.6e-15 Score=127.50 Aligned_cols=212 Identities=14% Similarity=0.128 Sum_probs=139.4
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE--ECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHH
Q ss_conf 111235303754320003787332222430478764--114788611788722787542100012320112675075673
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLN--FQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEA 228 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~--~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~ 228 (384)
T Consensus 1 fApLtvv~DG~~S~fRk~l~~~~~~v--~S~-FvGl~l~~~~lp~p~hGhViL~~~~PvL~YqIs~~etR~Lvdv~~~~l 77 (276)
T pfam08491 1 FAPLTIVCDGCFSKFRKSLSDNKVEV--GSY-FVGLILKNADLPAPNHGHVILGKPSPILLYQISSTETRILCDYPGPKL 77 (276)
T ss_pred CCCEEEEECCCCHHHHHHHCCCCCCE--EEE-EEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 99869981685058788734899963--016-899997178899988048996699868999728983689995378889
Q ss_pred HHHHHHHHHHHHHHHHH----CCCCCCCC-C-C--CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHH
Q ss_conf 24553223467887763----06754676-2-1--110223202233430456537942101100113844565321121
Q gi|254780842|r 229 DFYYKLPVNEIARRLEQ----YLYPVIGK-I-E--VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300 (384)
Q Consensus 229 ~~~~~~~~~~~~~~l~~----~~~~~~~~-~-~--~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai 300 (384)
T Consensus 78 P---s~~ng~~~~yl~~~v~P~lP~~lr~~f~~Al~~g~iRsMPn~~lp~~~~~~~G~illGDA~NmRHPLTGgGMTVal 154 (276)
T pfam08491 78 P---SIANGELKEYLKTSVAPQIPKELRPSFLAALDEGKIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVAL 154 (276)
T ss_pred C---CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCEEEEH
T ss_conf 9---8664168999997146679888999999999659924475021888767998789971110588985576667642
Q ss_pred HHHHHHHHHHHCCCC--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 238999999852579--90---799999999867999999999999999863679899999999999985083
Q gi|254780842|r 301 RDVIILLNLFQSEHM--SF---RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVT 368 (384)
Q Consensus 301 ~Da~~L~~~l~~~~~--~~---~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~ 368 (384)
T Consensus 155 ~Dvv~L~~lL~~~~dl~d~~~v~~~l~~F~~~Rk~~~s~IN~LA~ALY~lF~a~~~~l~~Lr~gcF~Yf~~GG 227 (276)
T pfam08491 155 NDIVLLRKLLGPLRDLSDREKVSKVLKSFHWLRKPYDAVINTLSIALYSLFAADSDELKALRKGCFDYFSLGG 227 (276)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 0899999863778885217999999999988625540879999999999984897799999999999997187