RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl
hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
(384 letters)
>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 225 bits (574), Expect = 2e-59
Identities = 117/388 (30%), Positives = 178/388 (45%), Gaps = 13/388 (3%)
Query: 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALV--SPRSFLQDLRTTMLMGEGIDFLKEINVW 60
DV I+G+G AG A+ A+ G L+ +PR L+ R L + L+ + +W
Sbjct: 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLW 61
Query: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120
D L+ + P +VD R + IF ++E+G A GY +P L+ + E
Sbjct: 62 DRLEALGVPPLHVMVVDDGGRRLL----IFDAAELGRGALGYVVPRSDLLNALLEAARAL 117
Query: 121 PLIHC-FDALANEIQIGEEEVTILLST-GQQIVGQFLIGSDGRNSSVRRQMGYGENKWS- 177
P + F A ++ + VT+ LS G+ + L+G+DG NS+VRR G E
Sbjct: 118 PNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRD 177
Query: 178 YPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVN 237
Y Q ALV N + PH GR E G +PL +N SS+VW + A+ L
Sbjct: 178 YGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDE 237
Query: 238 EIARRLEQYL--YPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQG 295
E R L++ L +G++ +V+ F LS ++ + + RVVL+G+AAHA+ P+ GQG
Sbjct: 238 EFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQG 297
Query: 296 LNLSMRDVIILLNLFQSEHMSFR--AIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLL 353
NL++ D L + A Y A RR + R + P
Sbjct: 298 ANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFA 357
Query: 354 QILRAGTFHLLKRVTPLRHQVMRQSLFL 381
+ LR LL R+ PLR + R + L
Sbjct: 358 RFLRNLGLRLLDRLPPLREALARLAAGL 385
>gnl|CDD|39059 KOG3855, KOG3855, KOG3855, Monooxygenase involved in coenzyme Q
(ubiquinone) biosynthesis [Coenzyme transport and
metabolism, Energy production and conversion].
Length = 481
Score = 89.3 bits (221), Expect = 2e-18
Identities = 98/452 (21%), Positives = 153/452 (33%), Gaps = 90/452 (19%)
Query: 3 HFDVIIIGSGLAGS--VAAIGAA------KKGFLTALVSPRSFLQDL------RTTMLMG 48
+DV+I+G G G AA+G+ K L A SP+ R + +
Sbjct: 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISP 95
Query: 49 EGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHV 108
I K I WD + F + + D A I + + I N
Sbjct: 96 ASISLFKSIGAWDHIFHDR--YQKFSRMLVWDSCSAA--LILFDHDNVGIDMAFIIENDN 151
Query: 109 LMESF--AEKISQDPLIHCFDALANEIQIGEEEVT----------ILLSTGQQIVGQFLI 156
+ S ++ S+ + + +A I E I L+ G LI
Sbjct: 152 IQCSLYNSQLDSESDNVTVIN-MAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLI 210
Query: 157 GSDGRNSSVRRQMGYGENKWSYPQKALV--LNFQHSMPHNGRCVEFHKSLGTITQIPLRE 214
G+DG NS VR+ W+Y Q A+V L + NG + G I +PL +
Sbjct: 211 GADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270
Query: 215 NFSSLVWIMESQEA--------------------------DFYYKLPV------------ 236
SSLVW + A +
Sbjct: 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESL 330
Query: 237 -NEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQG 295
N R Q P + ++ + Q F L + + RV L+G+AAH + P+ GQG
Sbjct: 331 LNTSKRLANQQYPPSVFEVGDKSRAQ-FPLGFGHADEYVTDRVALIGDAAHRVHPLAGQG 389
Query: 296 LNLSMRDVIIL-----------LNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNR 344
+NL DV IL L+L EH+ Y R + D ++
Sbjct: 390 VNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEP------YERERLQHNYVLLGAVDKLHK 443
Query: 345 SLFSRYPLLQILRAGTFHLLKRVTPLRHQVMR 376
+ P + +LR L + P+++ +M
Sbjct: 444 LYATSAPPVVLLRTFGLQLTNALAPVKNFIMV 475
>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
flavoprotein monooxygenases [Energy production and
conversion, General function prediction only].
Length = 420
Score = 80.8 bits (199), Expect = 6e-16
Identities = 74/381 (19%), Positives = 128/381 (33%), Gaps = 36/381 (9%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTM----LMGEGIDFLKEINVW 60
V+I+G G+ G A+ +KG ++ +D R L G LK I +
Sbjct: 4 KVVIVGGGIVGLATALALHRKGIDVVVLE---SREDPRGEGTSINLALNGWRALKAIGLK 60
Query: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120
+ +++ P+ L+ + E L N+ +L E+ +
Sbjct: 61 EQIREQGIPLGGRVLIHGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKF 120
Query: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180
+ EI+ +++ + LS G + G LIG DG S VR+ +G+ E ++ Q
Sbjct: 121 HSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQ 180
Query: 181 KALVLNF-QHSMPHNGR-----CVEFHKSLGTITQIPLRENFS-SLVWIMESQEADFYYK 233
L F + +P + H + SL + +
Sbjct: 181 AYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKL 240
Query: 234 LP-VNEIARRLEQYLYPVIGKIE----VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHAL 288
E+ + +I V T + +IS VVL+G+AAHA+
Sbjct: 241 KKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAM 300
Query: 289 PPICGQGLNLSMRDVIILLNLFQS----------------EHMSFRAIGNR-YHAMRRGD 331
P GQG N + D ++L E + + Y R
Sbjct: 301 TPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRR 360
Query: 332 IIKRIVGTDLFNRSLFSRYPL 352
+++ V L S PL
Sbjct: 361 LLRLKVDAYLVGILPQSFGPL 381
>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 69.8 bits (170), Expect = 1e-12
Identities = 69/370 (18%), Positives = 134/370 (36%), Gaps = 37/370 (10%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDF--LKEIN 58
M +DV+I+G+G AGS AA AK G ++ S G G+ L+E+
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE---PGAKPCCGGGLSPRALEELI 57
Query: 59 VWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKIS 118
DF ++I V+ R+ +++ GY + + AE+
Sbjct: 58 -PDFDEEIERKVTGARIYFPGEKVAIEVP----------VGEGYIVDRAKFDKWLAERAE 106
Query: 119 QDPLIHCFDALANEIQIGEEEVTILLSTGQQIV-GQFLIGSDGRNSSVRRQMGYGENKWS 177
+ + ++ V + + G V + +I +DG NS++ R++G K
Sbjct: 107 EAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLG---LKDR 163
Query: 178 YPQKALVLNFQH-SMPHNGRCVEFH------KSLGTITQIPLRENFSSLVWIMESQEADF 230
P+ + + +P +G EF G PL + +++ + D
Sbjct: 164 KPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLL---DD 220
Query: 231 YYKLPVNEIARRLEQYLYP---VIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHA 287
P E+ R +++ ++G + G S V+LVG+AA
Sbjct: 221 PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGF 280
Query: 288 LPPICGQGLNLSMRDVII----LLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFN 343
+ P+ G+G+ +++ + + + + + +K + L
Sbjct: 281 VNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLL 340
Query: 344 RSLFSRYPLL 353
R L P L
Sbjct: 341 RLLDRTLPAL 350
>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 57.3 bits (139), Expect = 7e-09
Identities = 65/334 (19%), Positives = 112/334 (33%), Gaps = 60/334 (17%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVS--------PRSFLQDLRTTMLMGEGIDFLKE 56
DV+I+G G AG + A+ A+ G LV PR+ + RT ++ L++
Sbjct: 3 DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRT-------MELLRQ 55
Query: 57 INVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDA-FGY----NIPNH---- 107
+ D + +AE + LD P
Sbjct: 56 AGLEDRI--LAEGAPHEG---MGLAFYNTSRR-----RADLDFLTSPPRVTVYPQTELEP 105
Query: 108 VLMESFAEKISQDPLIHCFDA-LANEIQIGEEEVTILL----STGQQIVGQFLIGSDGRN 162
+L E AE F + + Q G+ ++ + ++L+G DG
Sbjct: 106 ILREH-AEARGAQVR---FGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGR 161
Query: 163 SSVRRQMGY---GENKW---SYPQKALVLNFQHSMP-HNGRCVEFHKSLGTITQIPLREN 215
S VR+Q+G G S + + + + P R
Sbjct: 162 SPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSA 221
Query: 216 FSSLVWIMESQEADFYYKL---PVNEIARRLEQYLYPVIGKIEVVTD---VQIFQLSGMI 269
S ++ + ++ P +Q L +G + I+ + +
Sbjct: 222 GRSRYYVQ----VPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEILWKSIWGVRSRV 277
Query: 270 SHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDV 303
+ + K RV L G+AAH PP GQGLN ++D
Sbjct: 278 ATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDA 311
>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 48.3 bits (115), Expect = 4e-06
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
M +DV++IG+G AG VAAI AA+ G ALV L
Sbjct: 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39
>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 46.1 bits (110), Expect = 1e-05
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVS 33
DV++IGSGLAG AA+ AA+ G A+V
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVE 29
>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 44.1 bits (105), Expect = 6e-05
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALV 32
DVI+IG G AG AA+ AA+ G L+
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLI 28
>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 43.8 bits (103), Expect = 8e-05
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVS 33
FDV++IG G AG AAI AA+ G AL+S
Sbjct: 7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLS 36
>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
production and conversion].
Length = 506
Score = 42.6 bits (100), Expect = 2e-04
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
N +DV++IG G G VAAI AA+ G TA V R L
Sbjct: 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74
>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 40.7 bits (95), Expect = 7e-04
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRT 43
+DV+++G G AG+ AAI AA+KG T LV+ R Q L T
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDT 251
>gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport
and metabolism].
Length = 509
Score = 39.9 bits (93), Expect = 0.001
Identities = 69/328 (21%), Positives = 137/328 (41%), Gaps = 34/328 (10%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGE-----GIDFLKEINV 59
DVII+G+G+AGS A AK G V R + R ++GE G L ++ +
Sbjct: 47 DVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSEPDR---IVGELLQPGGYLALSKLGL 102
Query: 60 WDFLQDI-AEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKIS 118
D ++ I A+ V+ + + + + P + D G + N ++ +K +
Sbjct: 103 EDCVEGIDAQRVTGYAIFK-DGKEVDLP---YPLKNFPSDPSGRSFHNGRFVQRLRKKAA 158
Query: 119 QDPLIHCFDALANEIQIGEEE-----VTILLSTGQQI--VGQFLIGSDGRNSSVRRQMGY 171
P + + + EEE VT G+++ + DG S++RR +
Sbjct: 159 SLPNVRLEEGTVKSLL--EEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCD 216
Query: 172 GENKW--SYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIP------LRENFSSLVWIM 223
+ + SY ++ N + P++G + S + QI L + + +
Sbjct: 217 PKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSI 276
Query: 224 ESQEADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGE 283
+ E Y K +A ++ + L + +++ S M + KK V+L+G+
Sbjct: 277 ANGEMATYMK---ESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGD 333
Query: 284 AAHALPPICGQGLNLSMRDVIILLNLFQ 311
A + P+ G G+ +++ D+++L L +
Sbjct: 334 AFNMRHPLTGGGMTVALSDIVLLRRLLK 361
>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism].
Length = 421
Score = 39.1 bits (91), Expect = 0.002
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR-------SFLQDLRTTMLMGEGIDFLK 55
+FDV IIG GLAG + + G A+V+ S DL + G+ + +
Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLDLLGRLPDGQAVTDIH 61
Query: 56 EINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNH 107
+ D L+ A P + LV L A A E GL G NH
Sbjct: 62 D--GLDALRQQA-PAHPYSLVGAQKVLDLAQQAEALLDESGLQLQGSVEANH 110
>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in
cell division [Cell division and chromosome
partitioning].
Length = 621
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
+DVI+IG G AG AA+ AA+ G T L+
Sbjct: 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 38.2 bits (89), Expect = 0.003
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
M FDVIIIG G AG +AAI AAK G L+
Sbjct: 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLI 32
>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 38.0 bits (88), Expect = 0.004
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
M +DVIIIG G AG AAI AA+ G L+
Sbjct: 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLI 32
>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 37.4 bits (86), Expect = 0.008
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
M +DV++IG+GL G AA A+ G ++
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVL 32
>gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase
[Energy production and conversion].
Length = 680
Score = 36.5 bits (84), Expect = 0.013
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL--RTTMLMGEGIDFLKEINVWD 61
FDV+IIG G G+ A+ AA +G TALV F ++T L+ G+ +L E + +
Sbjct: 68 FDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYL-EKAISN 126
Query: 62 FLQDIAEPVSSFRLV 76
D + +RLV
Sbjct: 127 L--DYEQ----YRLV 135
>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 36.0 bits (82), Expect = 0.017
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
DV+IIG G+ G AA A++G ++
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVL 33
>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 35.6 bits (82), Expect = 0.022
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-------QDLRTTMLM---GEGIDF 53
FD +I+G+GL+G+V A AA+ G +V R+ + D +T +L+ G I
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH 61
Query: 54 LKEINVWDFLQDIAE 68
VWD++ E
Sbjct: 62 TDNKRVWDYVNQFTE 76
>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
involved in translation [Translation, ribosomal
structure and biogenesis].
Length = 679
Score = 35.3 bits (81), Expect = 0.026
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35
+DV++IG G AG AA AA+ G T L++
Sbjct: 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60
>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 35.2 bits (82), Expect = 0.032
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
+DVI+IG G AG +AAI AAK+G L+
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLI 29
>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 33.8 bits (77), Expect = 0.073
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
V++IG G+AG AA+ A GF LV +
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159
>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 33.9 bits (77), Expect = 0.074
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKG 26
+D +I+GSG AGSV A + G
Sbjct: 5 KMEYDYVIVGSGSAGSVLAARLSDAG 30
>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 309
Score = 33.9 bits (78), Expect = 0.083
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37
DV++IG G+ G A A++G L+
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDL 33
>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 33.0 bits (75), Expect = 0.15
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37
M FDVI+IG G+ G+ A AA +G ALV
Sbjct: 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDL 46
>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 32.5 bits (74), Expect = 0.21
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 2 NHFDVIIIGSGLAGSVAAIGAAKK 25
H DV+IIGSGLAG AA+ A
Sbjct: 6 EHPDVLIIGSGLAGLTAALSLAPS 29
>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 32.3 bits (73), Expect = 0.22
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
DVI++G+GLAG VAA A G ++
Sbjct: 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLIL 34
>gnl|CDD|31399 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in
translation [Translation, ribosomal structure and
biogenesis].
Length = 439
Score = 32.1 bits (73), Expect = 0.26
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKG 26
M + +IG+GLAGS AA AK+G
Sbjct: 1 MMQQPINVIGAGLAGSEAAWQIAKRG 26
>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
[Coenzyme metabolism].
Length = 262
Score = 31.0 bits (70), Expect = 0.60
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL--------QDLRTTMLMGEGIDFLKE 56
DVII+G+G +G AA AK G A+ + ++ E + L E
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDE 91
Query: 57 INV 59
+
Sbjct: 92 FGI 94
>gnl|CDD|34560 COG4952, COG4952, Predicted sugar isomerase [Cell envelope
biogenesis, outer membrane].
Length = 430
Score = 30.4 bits (68), Expect = 0.94
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 19/122 (15%)
Query: 188 QHSMPHNGRCVEFHKSLGTI---------TQIPLRENFSSLVWIMESQEADFYYKLPVNE 238
+ ++ HN CVE K+LG+ + P + NF+ Y LP +
Sbjct: 155 RQAIEHNLECVEIGKALGSKALTVWVGDGSNFPGQSNFTRAFERYLDSMKAIYAALPADW 214
Query: 239 IARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNL 298
+ P T VQ + + +I+ G++ LV HA N+
Sbjct: 215 RLFTEHKMFEPAF----YSTVVQDWGTNYLIAEELGERAFCLVDLGHHA------PNTNI 264
Query: 299 SM 300
M
Sbjct: 265 EM 266
>gnl|CDD|37242 KOG2031, KOG2031, KOG2031, Tyrosyl-DNA phosphodiesterase
[Replication, recombination and repair].
Length = 519
Score = 30.4 bits (68), Expect = 0.96
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 32 VSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFH 91
VSP F QDL I++L L++ + I R I + F
Sbjct: 224 VSPTGFKQDL---------IEYLNSYR-LPQLKEWIASLKKVDFSAINVRFIGSTPGKFQ 273
Query: 92 SSEIGLDAFGYNIPNHVLMESFAEKISQD-PLIHCFDALA 130
S L ++G+N +L E A + P++ ++
Sbjct: 274 GSG--LLSWGHNKLKKILKEHAASPYLERTPVVGQSSSIG 311
>gnl|CDD|39606 KOG4405, KOG4405, KOG4405, GDP dissociation inhibitor [Signal
transduction mechanisms, Intracellular trafficking,
secretion, and vesicular transport].
Length = 547
Score = 30.0 bits (67), Expect = 1.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37
FDV++IG+GL S+ A ++ G + +
Sbjct: 9 FDVVVIGTGLPESILAAACSRSGSSVLHLDSNEY 42
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 29.3 bits (66), Expect = 1.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALV 32
DV+I+G+G +G AA AKKG A++
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAII 46
>gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General
function prediction only].
Length = 399
Score = 28.8 bits (64), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
DVII+G+G+ G A AK+G L+
Sbjct: 8 RDVIIVGAGVFGLSTAYELAKRGDKILLL 36
>gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 28.7 bits (64), Expect = 2.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFL 54
+++IG+G GSV A A+ G ++ RS + R L+G ++ L
Sbjct: 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEAL 52
>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 28.5 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 1 MNHFDVIIIGSGLAGSVAAI 20
H DV IIG+G +G AA
Sbjct: 6 ATHTDVAIIGAGQSGLAAAY 25
>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
family) [General function prediction only].
Length = 623
Score = 28.8 bits (64), Expect = 3.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 2 NHFDVIIIGSGLAGSVAA 19
+ +D I++G G AG V A
Sbjct: 56 SSYDYIVVGGGTAGCVLA 73
>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 501
Score = 28.0 bits (62), Expect = 4.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 4 FDVIIIGSGLAGSVAA 19
VI+IG+GLAG AA
Sbjct: 16 KKVIVIGAGLAGLSAA 31
>gnl|CDD|33157 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 28.0 bits (62), Expect = 5.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
V I G+GLAG AA A G+ L R L
Sbjct: 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35
>gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 27.6 bits (61), Expect = 6.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGF 27
DVII+G+GLAG AA K G+
Sbjct: 9 DVIIVGAGLAGLSAAYELKKAGY 31
>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
and metabolism].
Length = 2142
Score = 27.6 bits (61), Expect = 6.2
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 19/74 (25%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS------------------FLQDLRTTM 45
V IIGSG AG AA K G T V RS F+ R +
Sbjct: 1786 KRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDL 1844
Query: 46 LMGEGIDFLKEINV 59
L EGI F+ +
Sbjct: 1845 LEQEGIRFVTNTEI 1858
>gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 27.6 bits (61), Expect = 6.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36
+ I+G+G+AG AA + G V +
Sbjct: 3 SIAIVGAGIAGLAAAYALREAG-REVTVFEKG 33
>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase
[Posttranslational modification, protein turnover,
chaperones].
Length = 322
Score = 27.3 bits (60), Expect = 8.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 3 HFDVIIIGSGLAGSVAAIGAAKK 25
+ +V+IIGSG A AAI AA+
Sbjct: 8 NENVVIIGSGPAAHTAAIYAARA 30
>gnl|CDD|31790 COG1602, COG1602, Uncharacterized conserved protein [Function
unknown].
Length = 402
Score = 26.8 bits (59), Expect = 9.5
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 40 DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSE 94
LR++++ G + + D L++I E S R VD+ +L P E
Sbjct: 92 KLRSSLVRGSRRVRVDDAREPDLLEEIQEAALSDRPVDVEAQLRRKPSGRLSFDE 146
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.325 0.141 0.416
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,788,521
Number of extensions: 261402
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 61
Length of query: 384
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 288
Effective length of database: 4,189,273
Effective search space: 1206510624
Effective search space used: 1206510624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)