BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl
hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
         (384 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 384

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/384 (100%), Positives = 384/384 (100%)

Query: 1   MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60
           MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW
Sbjct: 1   MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60

Query: 61  DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120
           DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD
Sbjct: 61  DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120

Query: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180
           PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ
Sbjct: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180

Query: 181 KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA 240
           KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA
Sbjct: 181 KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA 240

Query: 241 RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300
           RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM
Sbjct: 241 RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300

Query: 301 RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT 360
           RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT
Sbjct: 301 RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT 360

Query: 361 FHLLKRVTPLRHQVMRQSLFLRDL 384
           FHLLKRVTPLRHQVMRQSLFLRDL
Sbjct: 361 FHLLKRVTPLRHQVMRQSLFLRDL 384


>gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 380

 Score = 49.7 bits (117), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 35/376 (9%)

Query: 7   IIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID-FLKEINVWDFLQD 65
           +IIG+G++G   A     +G  + ++  +  L D    + +       LK I + D L+D
Sbjct: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60

Query: 66  IAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYN--------IPNHVLMESFAEKI 117
           I         ++  D +  +   +   S      +  N        +  H L +     I
Sbjct: 61  I--------WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112

Query: 118 SQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWS 177
              PL      L     I   + T +     Q     L+G+DG NS++R  +      +S
Sbjct: 113 QTQPLAR----LHLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFS 167

Query: 178 YPQKALVLNFQHSMPH--NGRCVE-FHKSLGTITQIPLRE-NFSSLVWIMESQEADFYYK 233
                  L  Q++ P   + + V  F      +   PLRE N  ++V++           
Sbjct: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227

Query: 234 LPVNEI-----ARRLEQYLYPVIGKIEVVTDVQIFQL-SGMISHCFGKKRVVLVGEAAHA 287
           L  +EI      + L  +   +I  I  + D  ++ L      H   KK  VL+G+AAH 
Sbjct: 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHT 287

Query: 288 LPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347
           L P   QG N+++ D   L  L   +  +  A  + Y  + R   +KRI      N+ LF
Sbjct: 288 LLPFAAQGANMAIEDAYALSYLLGKK--TIPAAISAYQKV-RAVRVKRIRYRTKLNQLLF 344

Query: 348 SRYPLLQILRAGTFHL 363
             +    + R     L
Sbjct: 345 HMHRPASLFRNAGLRL 360


>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 481

 Score = 36.2 bits (82), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
          +D+I+IGSG AG VAAI AA+ GF  A+V
Sbjct: 5  YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33


>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 321

 Score = 32.7 bits (73), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 5   DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD---LRTTMLMGEGIDFLKEINVWD 61
           DVI++G G   +  A+  AK      +V  RS L+    L+  + +   IDFL +  V D
Sbjct: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVD 207

Query: 62  FLQDIAEP-----VSSFRL 75
            +  I EP     VS  RL
Sbjct: 208 VIGSIPEPPLFPSVSGVRL 226



 Score = 25.0 bits (53), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 6  VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID 52
          ++IIGSG AG  AAI AA+      +++      DL   +++ E I+
Sbjct: 8  ILIIGSGPAGYTAAIYAARAMLKPVIIAG----SDLGGQLMITESIE 50


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 26.9 bits (58), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36
          +DVI+IG G AG  AA  AAK G  TAL++ ++
Sbjct: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 475

 Score = 26.6 bits (57), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 1   MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60
           M   D+ IIG G  GS  ++    KGF  A+ +    L D+    + G     +   N+ 
Sbjct: 1   MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60

Query: 61  DFLQDIAEPVSSFRLV---DITDRLITAPDAIFHSSEIGLDA 99
             ++ + +P     +V   D  D+LI     +    +I LD 
Sbjct: 61  QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDG 102


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 25.0 bits (53), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 8  IIGSGLAGSVAAIGAAKKGFLTALVSPRS 36
          IIG G    + ++ AA+ GF T ++ P S
Sbjct: 8  IIGGGQLARMLSMSAARLGFCTVILDPDS 36


>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score = 25.0 bits (53), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 303 VIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFS 348
           V IL+  F S  +  ++  + + A+ R   + R+VG  + N ++FS
Sbjct: 14  VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFS 59


>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 685

 Score = 24.3 bits (51), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 198 VEFHKSL-GTITQIPLRENFSSLV 220
           +E H++L G + Q PLREN  S +
Sbjct: 542 IEKHETLEGFVLQAPLRENLGSFI 565


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 466

 Score = 23.9 bits (50), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 4  FDVIIIGSGLAGSVAAIGAAK 24
          +DV ++G G AG   AI AA+
Sbjct: 3  YDVAVVGGGPAGYACAIKAAQ 23


>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 837

 Score = 23.5 bits (49), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 23  AKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFL-QDIAEPVSSFRLVDITDR 81
            K+  L A+ SPR    DL    L    +D+L   N+   L Q +    S+ R+  +  R
Sbjct: 116 TKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALR 175

Query: 82  LI 83
           LI
Sbjct: 176 LI 177


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 1576

 Score = 23.5 bits (49), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 70  VSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLM 110
           ++ F LVD  D L+ A   IFH   +  D+F     NH++M
Sbjct: 598 IARFDLVDRRDALVEAFKYIFH-ERVDNDSF-----NHLIM 632


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,475
Number of Sequences: 1233
Number of extensions: 10164
Number of successful extensions: 42
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 15
length of query: 384
length of database: 328,796
effective HSP length: 76
effective length of query: 308
effective length of database: 235,088
effective search space: 72407104
effective search space used: 72407104
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)