BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] (384 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/384 (100%), Positives = 384/384 (100%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW Sbjct: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60 Query: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD Sbjct: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120 Query: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ Sbjct: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180 Query: 181 KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA 240 KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA Sbjct: 181 KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA 240 Query: 241 RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300 RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM Sbjct: 241 RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300 Query: 301 RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT 360 RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT Sbjct: 301 RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT 360 Query: 361 FHLLKRVTPLRHQVMRQSLFLRDL 384 FHLLKRVTPLRHQVMRQSLFLRDL Sbjct: 361 FHLLKRVTPLRHQVMRQSLFLRDL 384 >gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 380 Score = 49.7 bits (117), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 35/376 (9%) Query: 7 IIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID-FLKEINVWDFLQD 65 +IIG+G++G A +G + ++ + L D + + LK I + D L+D Sbjct: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 Query: 66 IAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYN--------IPNHVLMESFAEKI 117 I ++ D + + + S + N + H L + I Sbjct: 61 I--------WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112 Query: 118 SQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWS 177 PL L I + T + Q L+G+DG NS++R + +S Sbjct: 113 QTQPLAR----LHLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFS 167 Query: 178 YPQKALVLNFQHSMPH--NGRCVE-FHKSLGTITQIPLRE-NFSSLVWIMESQEADFYYK 233 L Q++ P + + V F + PLRE N ++V++ Sbjct: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 Query: 234 LPVNEI-----ARRLEQYLYPVIGKIEVVTDVQIFQL-SGMISHCFGKKRVVLVGEAAHA 287 L +EI + L + +I I + D ++ L H KK VL+G+AAH Sbjct: 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHT 287 Query: 288 LPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347 L P QG N+++ D L L + + A + Y + R +KRI N+ LF Sbjct: 288 LLPFAAQGANMAIEDAYALSYLLGKK--TIPAAISAYQKV-RAVRVKRIRYRTKLNQLLF 344 Query: 348 SRYPLLQILRAGTFHL 363 + + R L Sbjct: 345 HMHRPASLFRNAGLRL 360 >gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 481 Score = 36.2 bits (82), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 18/29 (62%), Positives = 23/29 (79%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 +D+I+IGSG AG VAAI AA+ GF A+V Sbjct: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33 >gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 32.7 bits (73), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD---LRTTMLMGEGIDFLKEINVWD 61 DVI++G G + A+ AK +V RS L+ L+ + + IDFL + V D Sbjct: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVD 207 Query: 62 FLQDIAEP-----VSSFRL 75 + I EP VS RL Sbjct: 208 VIGSIPEPPLFPSVSGVRL 226 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Query: 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID 52 ++IIGSG AG AAI AA+ +++ DL +++ E I+ Sbjct: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAG----SDLGGQLMITESIE 50 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 26.9 bits (58), Expect = 0.60, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 +DVI+IG G AG AA AAK G TAL++ ++ Sbjct: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 26.6 bits (57), Expect = 0.68, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60 M D+ IIG G GS ++ KGF A+ + L D+ + G + N+ Sbjct: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60 Query: 61 DFLQDIAEPVSSFRLV---DITDRLITAPDAIFHSSEIGLDA 99 ++ + +P +V D D+LI + +I LD Sbjct: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDG 102 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 8 IIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 IIG G + ++ AA+ GF T ++ P S Sbjct: 8 IIGGGQLARMLSMSAARLGFCTVILDPDS 36 >gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 25/46 (54%) Query: 303 VIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFS 348 V IL+ F S + ++ + + A+ R + R+VG + N ++FS Sbjct: 14 VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFS 59 >gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] Length = 685 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Query: 198 VEFHKSL-GTITQIPLRENFSSLV 220 +E H++L G + Q PLREN S + Sbjct: 542 IEKHETLEGFVLQAPLRENLGSFI 565 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 23.9 bits (50), Expect = 5.4, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 4 FDVIIIGSGLAGSVAAIGAAK 24 +DV ++G G AG AI AA+ Sbjct: 3 YDVAVVGGGPAGYACAIKAAQ 23 >gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 837 Score = 23.5 bits (49), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 23 AKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFL-QDIAEPVSSFRLVDITDR 81 K+ L A+ SPR DL L +D+L N+ L Q + S+ R+ + R Sbjct: 116 TKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALR 175 Query: 82 LI 83 LI Sbjct: 176 LI 177 >gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 1576 Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%) Query: 70 VSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLM 110 ++ F LVD D L+ A IFH + D+F NH++M Sbjct: 598 IARFDLVDRRDALVEAFKYIFH-ERVDNDSF-----NHLIM 632 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.141 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,475 Number of Sequences: 1233 Number of extensions: 10164 Number of successful extensions: 42 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 15 length of query: 384 length of database: 328,796 effective HSP length: 76 effective length of query: 308 effective length of database: 235,088 effective search space: 72407104 effective search space used: 72407104 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)