HHsearch alignment for GI: 254780843 and conserved domain: COG2223
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism].
Probab=100.00 E-value=2.6e-37 Score=203.32 Aligned_cols=385 Identities=16% Similarity=0.178 Sum_probs=287.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 53112005999999999999999987-38998999999809998999999999999999999999999985262899999
Q gi|254780843|r 3 DTIARNIQCTKIYIFILFFLFGGITS-LNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICT 81 (420)
Q Consensus 3 ~~~~k~~~~~~i~i~~~ff~~g~~~~-~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~ 81 (420)
T Consensus 5 ~~~~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~ 84 (417)
T COG2223 5 EARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTIL 84 (417)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 74354400579999999999999999999998865412148898889999999998747899877753401284379999
Q ss_pred HHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99976432100000013202467899988777567888765310000123035788776644311000034547888886
Q gi|254780843|r 82 GLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVL 161 (420)
Q Consensus 82 ~~~~~~i~~ll~~~a~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 161 (420)
T Consensus 85 s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v 162 (417)
T COG2223 85 SMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV 162 (417)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE-HCCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
T ss_conf 99999999999999712875689999999970166300-002544211188544418988760-5530199999988999
Q ss_pred HHCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCC
Q ss_conf 412342--046776555557789888642001121100134555543210123101233210001-11122211111110
Q gi|254780843|r 162 MLGNLA--SPNTSMLADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISF-LKTLDILANPRFTM 238 (420)
Q Consensus 162 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 238 (420)
T Consensus 163 ~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~----~---------~-d~p~~------r~~~~~~~~~~~~~v~~~~~~W~ 222 (417)
T COG2223 163 AVAFGFLAWRNVAGIYVVALAIAAVLAWLG----M---------N-DVPEH------RASVKPQLPAQLKAVFSNKDTWL 222 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------C-CCHHH------HCCCCCCCHHHHHHHHCCCCHHH
T ss_conf 999725899999999999999999999998----4---------7-68665------23555320057788863820699
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 00111000135567789999875420122210124688899998764310011111100000000012455554567689
Q gi|254780843|r 239 GAVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVIL 318 (420)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (420)
T Consensus 223 lsllY~~tFG~Fvgfs~~l~~~~~~~--fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~ 300 (417)
T COG2223 223 LSLLYFATFGGFVGFSAYLPMYLVTQ--FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAAL 300 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999986--4987231889999878899999850444433135344799999999999999
Q ss_pred HHHCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 96223--------36899999999999999999999999963015656999999-9999999999999999999612-37
Q gi|254780843|r 319 SSYTT--------GFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSGII-CTTISGGVIIPLGVGYLVDIAS-LR 388 (420)
Q Consensus 319 ~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~p~i~G~l~d~~g-~~ 388 (420)
T Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~ 380 (417)
T COG2223 301 LSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYT 380 (417)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 97056344667643999999999999915676300331318778664678879988542566540489999998426379
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999985311
Q gi|254780843|r 389 DAMFVPAVCYIIIAIYGIYCCYK 411 (420)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~ 411 (420)
T Consensus 381 ~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 381 GAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999971