HHsearch alignment for GI: 254780843 and conserved domain: COG2814
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism].
Probab=100.00 E-value=1.9e-39 Score=214.05 Aligned_cols=386 Identities=12% Similarity=0.065 Sum_probs=289.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 53112005999999999999999987389989999998099989999999999999999999999999852628999999
Q gi|254780843|r 3 DTIARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTG 82 (420)
Q Consensus 3 ~~~~k~~~~~~i~i~~~ff~~g~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~ 82 (420)
T Consensus 5 ~~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~ 84 (394)
T COG2814 5 ATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGL 84 (394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 32333633899999999999884788688222889988399888999999999999999889999987133538999999
Q ss_pred HHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99764321000000132024678999887775678887653100001230357887766443110000345478888864
Q gi|254780843|r 83 LLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLM 162 (420)
Q Consensus 83 ~~~~~i~~ll~~~a~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 162 (420)
T Consensus 85 l~lFi~~n~l~alA---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig 161 (394)
T COG2814 85 LALFIVSNLLSALA---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG 161 (394)
T ss_pred HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999998999995---319999999999998889999999999998759521245999999779999998512899999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 12342046776555557789888642001121100134555543210123101233210001111222111111100011
Q gi|254780843|r 163 LGNLASPNTSMLADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVC 242 (420)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (420)
T Consensus 162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP----------------------~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~ 219 (394)
T COG2814 162 QLFGWRATFLAIAVLALLALLLLWKLLP----------------------PSEISGSLPGPLRTLLRLLRRPGVLLGLLA 219 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------CCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 8863899999999999999999999699----------------------966778777644679989668458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 10001355677899998754201222101246888999987643100111111000000000124555545676899622
Q gi|254780843|r 243 IFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYT 322 (420)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (420)
T Consensus 220 t~l~~~g~F~~ftYi~P~L~~v--~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~ 296 (394)
T COG2814 220 TFLFMTGHFALYTYIRPFLESV--AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT 296 (394)
T ss_pred HHHHHCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999816244489579999873--59987688999999989999987777640202-10669999999999999999983
Q ss_pred -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -336-89999999999999999999999996301565699999999-999999999999999996123799999999999
Q gi|254780843|r 323 -TGF-ISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSGIICT-TISGGVIIPLGVGYLVDIASLRDAMFVPAVCYI 399 (420)
Q Consensus 323 -~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~ 399 (420)
T Consensus 297 ~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~ 376 (394)
T COG2814 297 GASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLL 376 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 11199999999999998630156788875024777437999999999999999999998999981035778999999999
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 99999998531110201
Q gi|254780843|r 400 IIAIYGIYCCYKENNFE 416 (420)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ 416 (420)
T Consensus 377 ~a~~~~~~~~~~~~~~~ 393 (394)
T COG2814 377 LALLLALLSARKDRRTA 393 (394)
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999874014468