HHsearch alignment for GI: 254780843 and conserved domain: PRK11102
>PRK11102 bicyclomycin/multidrug efflux system; Provisional.
Probab=100.00 E-value=1.7e-44 Score=239.31 Aligned_cols=367 Identities=11% Similarity=0.046 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHCCCCCHHHH
Q ss_conf 99873899899999980999899999999999999999999999998526289999999976432100000013202467
Q gi|254780843|r 25 GITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKV 104 (420)
Q Consensus 25 ~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ll~~~a~~~~~~~~ 104 (420)
T Consensus 5 l~~d~~lPalp~i~~~~~~s~~~~~~~~s~~~l~~a~~~l~~G~lsD~~GRr~~~~~~~~~~~i~~~~~~~a---~~~~~ 81 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---QTIDQ 81 (377)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---CCHHH
T ss_conf 898799986999999979499899999999999999999999999998188899999999999999999985---67999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89998877756788876531000012303578877664431100003454788888641234204677655555778988
Q gi|254780843|r 105 FLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTD 184 (420)
Q Consensus 105 ~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (420)
T Consensus 82 l~~~R~lqG~~~~~~~~~~~a~i~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iGg~l~~~~gWr~~F~~~~~~~~l~~~l 161 (377)
T PRK11102 82 LIVMRFLQGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGYLLVWFSWHSIFWVLALAAILASAL 161 (377)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998653001305889999970799999998799999999704888887799981356689999999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86420011211001345555432101231012332100011112221111111000111000135567789999875420
Q gi|254780843|r 185 TARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRH 264 (420)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (420)
T Consensus 162 ~~~~lp-----------------et~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~f~~~~p~~~~-- 222 (377)
T PRK11102 162 VFFLIP-----------------ETLPPENRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYI-- 222 (377)
T ss_pred HHHHCC-----------------CCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999754-----------------4578446788779999999999995868999999999999999999983479999--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHC---C-H-HHHHHHHHHHHHHHH
Q ss_conf 1222101246888999987643100111111000000000124555545676899622---3-3-689999999999999
Q gi|254780843|r 265 DTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYT---T-G-FISGWSLIAVGLFNS 339 (420)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~g~~~~ 339 (420)
T Consensus 223 ~~~gls~~~~gl~~~~~~~~~~~gs~l~grl~~r~g~~~~~~~gl~i~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~g 302 (377)
T PRK11102 223 EIYGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCIS 302 (377)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98299989999999999999999999999999995889999999999999999999999987779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999996301565699999999-999999999999999996123799999999999999999985311102
Q gi|254780843|r 340 IMFPTIFSLASASLEDQASGGSGIICT-TISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENN 414 (420)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (420)
T Consensus 303 ~~~~~~~a~a~~~~p~~aG~Asal~g~~~~~~ga~~~~l~~~~~~~~~~~l~~~-~~~~~~la~l~~l~~~R~~~~ 377 (377)
T PRK11102 303 MISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAPFNSAWPMIWS-MAFCSILSILFYLYASRPKKK 377 (377)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999976671177999999999999999999999998537987999999-999999999999999073579