HHsearch alignment for GI: 254780843 and conserved domain: PRK11652
>PRK11652 emrD multidrug resistance protein D; Provisional.
Probab=100.00 E-value=2.8e-45 Score=243.83 Aligned_cols=382 Identities=12% Similarity=0.061 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 1120059999999999-999999873899899999980999899999999999999999999999998526289999999
Q gi|254780843|r 5 IARNIQCTKIYIFILF-FLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGL 83 (420)
Q Consensus 5 ~~k~~~~~~i~i~~~f-f~~g~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~ 83 (420)
T Consensus 1 m~~~~~~~~i~~l~~l~~~~~la~d~ylPalP~ia~~~~~s~~~vq~tls~f~~g~a~~ql~~GpLSDr~GRk~vll~gl 80 (394)
T PRK11652 1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGALQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM 80 (394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99875547999999999999999988986099999996989989999999999999999999999998828869999999
Q ss_pred HHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97643210000001320246789998877756788876531000012303578877664431100003454788888641
Q gi|254780843|r 84 LIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLML 163 (420)
Q Consensus 84 ~~~~i~~ll~~~a~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 163 (420)
T Consensus 81 ~lf~i~s~~~a~a---~si~~ll~~R~lQG~Ga~~~~v~~~AiirD~~~g~~~ak~~s~~~~~~~~~p~laP~iGg~l~~ 157 (394)
T PRK11652 81 SIFILGTLVALTA---HSLTVLIAASAIQGMGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILFSPLLAPLIGGLLTT 157 (394)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999987---6799999999982766510000999998863689999999999889999851026169999980
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 23420467765555577898886420011211001345555432101231012332100011112221111111000111
Q gi|254780843|r 164 GNLASPNTSMLADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCI 243 (420)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (420)
T Consensus 158 ~~gWr~~F~~l~~~~~~~~l~~~~~lpET---------------~~~~------~~~~~~~~~y~~ll~~~~f~~~~l~~ 216 (394)
T PRK11652 158 LFGWRACYLFLLVFGAGVTFSMARWMPET---------------LPKD------ARRTRVLASYKTLLGNRRFNCYLLML 216 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCC---------------CCCC------CCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 05599999999999999999999968888---------------9964------56301899999998675799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHH----
Q ss_conf 0001355677899998754201222101246888999987643100111111000000000124555545676899----
Q gi|254780843|r 244 FLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILS---- 319 (420)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 319 (420)
T Consensus 217 ~~~~~~~~~f~~~~p~v--~~~~~gls~~~~g~~f~~~~~~~~~g~~l~~rl~~r~~~~~~~g~~~~~~~~~~~l~~~~~ 294 (394)
T PRK11652 217 IATLAGIAVFEACAGVL--MGAVLGLSSMTVSILFILPIPGYFFGAWFAGRPNKRFSTLMWQSVICCLLGGLFMWIPGWF 294 (394)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999964999--9998279889999999999999999999999999999999999999999999999999988
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62233689999999999999999999999996301565699999999-99999999999999999612379999999999
Q gi|254780843|r 320 SYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSGIICT-TISGGVIIPLGVGYLVDIASLRDAMFVPAVCY 398 (420)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~ 398 (420)
T Consensus 295 ~~~~~~~l~~~~~l~~~g~G~~~p~~~a~al~~~~~~aGtAsal~g~~q~~~~~~~~~l~~~l~~~~~~~l~~~~~--~~ 372 (394)
T PRK11652 295 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQGSLGLLMT--LM 372 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HH
T ss_conf 7745999999999999999988899999997648430309999999999999999999999713697689999999--99
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999985311102
Q gi|254780843|r 399 IIIAIYGIYCCYKENN 414 (420)
Q Consensus 399 ~~~~~~~~~~~~~~~~ 414 (420)
T Consensus 373 ~~~~l~~~l~l~~r~~ 388 (394)
T PRK11652 373 GLLILLCWLPLASRMS 388 (394)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999986344