HHsearch alignment for GI: 254780843 and conserved domain: PRK11652

>PRK11652 emrD multidrug resistance protein D; Provisional.
Probab=99.58  E-value=9.1e-14  Score=85.32  Aligned_cols=146  Identities=10%  Similarity=-0.021  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             67789999875420122210124688899998764310011111100000000012455554567689962233689999
Q gi|254780843|r  251 VAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWS  330 (420)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (420)
T Consensus        22 la~d~ylPalP~ia~~~~~s~~~vq~tls~f~~g~a~~ql~~GpLSDr~GRk~vll~gl~lf~i~s~~~a~a~si~~ll~  101 (394)
T PRK11652         22 MAQTIYVPAIADMARDLNVREGALQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALTAHSLTVLIA  101 (394)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988986099999996989989999999999999999999999998828869999999999999999998767999999


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9-9999999999999999999630156-5699-999999999999999999999996123799999999
Q gi|254780843|r  331 L-IAVGLFNSIMFPTIFSLASASLEDQ-ASGG-SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAV  396 (420)
Q Consensus       331 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~  396 (420)
T Consensus       102 ~R~lQG~Ga~~~~v~~~AiirD~~~g~~~ak~~s~~~~~~~~~p~laP~iGg~l~~~~gWr~~F~~l~~  170 (394)
T PRK11652        102 ASAIQGMGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILFSPLLAPLIGGLLTTLFGWRACYLFLLV  170 (394)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999827665100009999988636899999999998899998510261699999800559999999999