HHsearch alignment for GI: 254780843 and conserved domain: PRK11652
>PRK11652 emrD multidrug resistance protein D; Provisional.
Probab=99.58 E-value=9.1e-14 Score=85.32 Aligned_cols=146 Identities=10% Similarity=-0.021 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 67789999875420122210124688899998764310011111100000000012455554567689962233689999
Q gi|254780843|r 251 VAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWS 330 (420)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (420)
T Consensus 22 la~d~ylPalP~ia~~~~~s~~~vq~tls~f~~g~a~~ql~~GpLSDr~GRk~vll~gl~lf~i~s~~~a~a~si~~ll~ 101 (394)
T PRK11652 22 MAQTIYVPAIADMARDLNVREGALQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALTAHSLTVLIA 101 (394)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988986099999996989989999999999999999999999998828869999999999999999998767999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999999999999999999630156-5699-999999999999999999999996123799999999
Q gi|254780843|r 331 L-IAVGLFNSIMFPTIFSLASASLEDQ-ASGG-SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAV 396 (420)
Q Consensus 331 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~ 396 (420)
T Consensus 102 ~R~lQG~Ga~~~~v~~~AiirD~~~g~~~ak~~s~~~~~~~~~p~laP~iGg~l~~~~gWr~~F~~l~~ 170 (394)
T PRK11652 102 ASAIQGMGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILFSPLLAPLIGGLLTTLFGWRACYLFLLV 170 (394)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999827665100009999988636899999999998899998510261699999800559999999999