HHsearch alignment for GI: 254780843 and conserved domain: TIGR00710
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=100.00 E-value=2e-37 Score=203.95 Aligned_cols=354 Identities=14% Similarity=0.084 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999-998738998999999809998999999999999999999999999985262899999999764321
Q gi|254780843|r 12 TKIYIFILFFLFG-GITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGC 90 (420)
Q Consensus 12 ~~i~i~~~ff~~g-~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ 90 (420)
T Consensus 5 ~~~~~L~~L~~L~pl~~DMYLPa~p~i~~~L~~~as~vQ~tLt~yl~G~a~GQL~~GPlSD~~GRrPvlL~G~~~fa~~S 84 (400)
T TIGR00710 5 AFVLLLGLLSILGPLGIDMYLPAFPEIAKDLSVSASLVQLTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLLIFALSS 84 (400)
T ss_pred HHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999989876320211252120789898628786689999999999999989865233320367238899999999999
Q ss_pred HCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHH--HHHHCCCC
Q ss_conf 000000132024678999887775678887653100001230-357887766443110000345478888--86412342
Q gi|254780843|r 91 ILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGD-PNTAVSRLTFAQFFNSLGTAIFPYIGS--VLMLGNLA 167 (420)
Q Consensus 91 ll~~~a~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~~~ 167 (420)
T Consensus 85 l~~~~~---~ni~~L~~lRF~Qa~gasA~~V~~~AlvRD~Y~G~~e~s~~~s~l~~~~~~~P~~aP~~Ggai~~~~~l~W 161 (400)
T TIGR00710 85 LGLALS---NNIETLLVLRFLQAFGASAALVISQALVRDIYPGREELSKIYSILMLVLALAPAVAPLIGGAIYVLVFLSW 161 (400)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998---51999999999999999899999998885020325789999999999999998788888699999985209
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 04677655555778988864200112110013455554321012310123321000111122211111110001110001
Q gi|254780843|r 168 SPNTSMLADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYV 247 (420)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (420)
T Consensus 162 haIF~~L~l~~~~l~a~~f~~~-----------------pET~~~~~r~P~~~~~~~~~f~~l~k~k~~~gY~L~~ga~~ 224 (400)
T TIGR00710 162 HAIFAVLSLIGILLSALIFFLL-----------------PETLPKEKRIPLQISTSVETFLLLLKDKEFLGYALIYGASF 224 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999855-----------------12274010374030013999867887688899999999986
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHH---------HHHHHHHHHH
Q ss_conf 3556778999987542012221012468889999876431001111110000000001245---------5554567689
Q gi|254780843|r 248 GAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAF---------ATTACSLVIL 318 (420)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 318 (420)
T Consensus 225 g~~Faf~~~~Pfv~~~--~~gVsp~~fg~lf~~~~~a~i~g~f~~gr~~~k~~~~~~lr~~~GfifslCGl~~~~~~a~~ 302 (400)
T TIGR00710 225 GGFFAFLSGAPFVYID--IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKIGAKSLLRIAVGFIFSLCGLVLFIVSAVL 302 (400)
T ss_pred HHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8789999841788640--01465677899999999999999999986665431001478999999999999999999999
Q ss_pred HHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9622336------899999999999999999999999963015656999999999--99999999999999996123
Q gi|254780843|r 319 SSYTTGF------ISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSGIICTT--ISGGVIIPLGVGYLVDIASL 387 (420)
Q Consensus 319 ~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~i~p~i~G~l~d~~g~ 387 (420)
T Consensus 303 l~~~~~~~l~~~~~~i~~~~~~~~g~~~~~s~a~~~AL~~f~h~aGtA~al~g~l~~~l~a~vg~lvs~~i~~~Ta~ 379 (400)
T TIGR00710 303 LVITALLGLGSWLLIIGPMIFVGIGVSMVSSIAMALALEKFPHVAGTASALLGTLRLVLGAIVGLLVSSLIKINTAW 379 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999986799999999999999768899999999986215874101999999999999999999999751676148