HHsearch alignment for GI: 254780843 and conserved domain: TIGR00792
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter; InterPro: IPR001927 It has been shown that integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. This collection of sequences represents the sodium: galactoside symporter family (SGF). Like sugar transport proteins, these integral membrane proteins are predicted to comprise twelve membrane spanning domains. ; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=99.48 E-value=1.8e-10 Score=68.78 Aligned_cols=339 Identities=12% Similarity=0.077 Sum_probs=205.1
Q ss_pred HHHHHHHHHHCCCHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHC---H----HHHHHHHHHHHHHHHHCCHHC
Q ss_conf 989999998099989999--------9999999999999999999998526---2----899999999764321000000
Q gi|254780843|r 32 ILVPKLQNSFSLTYLQAM--------LVEAIFFSCYFFFSIPAGMFIQRYG---Y----IKGICTGLLIMSLGCILFTAT 96 (420)
Q Consensus 32 ~~~p~l~~~~~~s~~~~g--------~i~s~~~~~~~i~~~~~G~l~Dr~G---r----r~~l~~~~~~~~i~~ll~~~a 96 (420)
T Consensus 21 YL~~fyTDv~G~~a~~~G~n~~iLiTtlflV~Ri~dAi~DP~~G~~vD~T~~I~rwGKFRPw~L~Ga~p~~~~~vL~F~~ 100 (470)
T TIGR00792 21 YLLFFYTDVLGLSAAIVGANKLILITTLFLVARILDAITDPIMGLIVDRTRNITRWGKFRPWLLIGAIPFAIVLVLLFTT 100 (470)
T ss_pred HHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC
T ss_conf 99998862156843112345326789999999999998334675675244588879643300020178999999999824
Q ss_pred CCCC-------HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Q ss_conf 1320-------2467899988777567888765310000123-035788776644311000034547888886412342-
Q gi|254780843|r 97 IEIT-------TFKVFLIALCILAIGVVIIQVALNPFISLLG-DPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLA- 167 (420)
Q Consensus 97 ~~~~-------~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~- 167 (420)
T Consensus 101 ~~~~~~~n~~~~~v~a~~tYi~~g~~Ys~~niPy~sl~p~~T~d~~ER~~l~~~r~~~a~~G~~~~~~~~~P~~~~~~~~ 180 (470)
T TIGR00792 101 PDFSATGNPIGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGI 180 (470)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 57554311778999999999998466221013621035432578310021201878999999999999999999860665
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC---CCHHH-HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf ----046776555557789888642001121100134555543210123---10123-3210001111222111111100
Q gi|254780843|r 168 ----SPNTSMLADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRN---SFADH-KRNHISFLKTLDILANPRFTMG 239 (420)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (420)
T Consensus 181 ~~~~~~~~G~~~~~~i~~~~g~~~~~~c-------------~~~tkE~~~~~~~~~~~~~~~~~~~~~~~l~~N~qL~~l 247 (470)
T TIGR00792 181 SAGEDDKLGWFMFALILALIGVVLLIIC-------------FFGTKERVSVSEIPKKSEKKLSLKKIFKALFKNDQLLIL 247 (470)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH-------------HCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf 4688885058999999999999999987-------------167732131033211356778689999998528889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 011100013556778999987542012221012468889999-8764310011111100000000012455554567689
Q gi|254780843|r 240 AVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIY-WGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVIL 318 (420)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (420)
T Consensus 248 ~~~~l~~~~a~~i~~~~~~YYf~Yv--lg~-~~lf~~~~~~~~~~~~l~~~~l~P~l~k~~grk~~~~~~~~~~~~g~l~ 324 (470)
T TIGR00792 248 CLAYLFYLLAFNIKNGVQVYYFTYV--LGD-PELFSILGLIAFIGAGLIGVLLFPRLVKKFGRKRLFLIGILLMVLGLLI 324 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHEEEEEE--ECC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998765630234577--466-7899999999999999999987877887612599999999999999999
Q ss_pred HHHCC--HHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHH--H-----HH-HHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96223--368--9999999999999999999999----996301--5-----65-699-999999999999999999999
Q gi|254780843|r 319 SSYTT--GFI--SGWSLIAVGLFNSIMFPTIFSL----ASASLE--D-----QA-SGG-SGIICTTISGGVIIPLGVGYL 381 (420)
Q Consensus 319 ~~~~~--~~~--~~~~~~~~g~~~~~~~~~~~~~----~~~~~~--~-----~~-~~~-~~~~~~~~~g~~i~p~i~G~l 381 (420)
T Consensus 325 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~vi~~~D~VdYGE~k~G~R~Eg~~~S~~~f~~K~G~A~~g~~~G~~ 404 (470)
T TIGR00792 325 LFFVGKASNLPLILVLIIIAGFGQNFVTGLVWALQVIMVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 404 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98731677999999999999887767789878888644202322102014855079999999999999889989999999
Q ss_pred HHHHH
Q ss_conf 99612
Q gi|254780843|r 382 VDIAS 386 (420)
Q Consensus 382 ~d~~g 386 (420)
T Consensus 405 L~~~G 409 (470)
T TIGR00792 405 LGIIG 409 (470)
T ss_pred HHHHC
T ss_conf 99727