HHsearch alignment for GI: 254780843 and conserved domain: TIGR00882
>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=97.11 E-value=0.0029 Score=32.64 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHH-HHHHCCHHHH--
Q ss_conf 77899998754-2012221012468889999876431001111110000000001245555456768-9962233689--
Q gi|254780843|r 252 AIGSIMANYLM-RHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVI-LSSYTTGFIS-- 327 (420)
Q Consensus 252 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 327 (420)
T Consensus 17 im~~~fpf~piWL~~~~gl~kt~tGi~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvlfaPFfiyVf~PLL~~ 96 (397)
T TIGR00882 17 IMSAYFPFFPIWLKDVNGLTKTETGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVLFAPFFIYVFAPLLQS 96 (397)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988533477884225477763577888899999987666400201235506899999999998615998986779998
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --9999999999999999999999963015656999-----999999999999999999999961237999999999999
Q gi|254780843|r 328 --GWSLIAVGLFNSIMFPTIFSLASASLEDQASGGS-----GIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYII 400 (420)
Q Consensus 328 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~ 400 (420)
T Consensus 97 Ni~~G~l~Gg~y~G~~f~AG~Ga~-eayiEkvsR~~~FEYG~aR~fGc~GwAlcA~~~GIlF~-i~p~~~FWl~S~~a~~ 174 (397)
T TIGR00882 97 NILVGALVGGLYLGFVFSAGAGAI-EAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPSIVFWLGSGFALI 174 (397)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHCCEEEE-CCCCHHHHHHHHHHHH
T ss_conf 999999986999877873257346-88897875247984001788872137877653030030-0664145788999999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999985311102
Q gi|254780843|r 401 IAIYGIYCCYKENN 414 (420)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (420)
T Consensus 175 l~~ll~~~k~~~~~ 188 (397)
T TIGR00882 175 LMLLLMVAKPKSSD 188 (397)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999761699872