HHsearch alignment for GI: 254780843 and conserved domain: TIGR00882

>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=97.11  E-value=0.0029  Score=32.64  Aligned_cols=161  Identities=11%  Similarity=0.038  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHH-HHHHCCHHHH--
Q ss_conf             77899998754-2012221012468889999876431001111110000000001245555456768-9962233689--
Q gi|254780843|r  252 AIGSIMANYLM-RHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVI-LSSYTTGFIS--  327 (420)
Q Consensus       252 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--  327 (420)
T Consensus        17 im~~~fpf~piWL~~~~gl~kt~tGi~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvlfaPFfiyVf~PLL~~   96 (397)
T TIGR00882        17 IMSAYFPFFPIWLKDVNGLTKTETGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVLFAPFFIYVFAPLLQS   96 (397)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988533477884225477763577888899999987666400201235506899999999998615998986779998


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --9999999999999999999999963015656999-----999999999999999999999961237999999999999
Q gi|254780843|r  328 --GWSLIAVGLFNSIMFPTIFSLASASLEDQASGGS-----GIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYII  400 (420)
Q Consensus       328 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~  400 (420)
T Consensus        97 Ni~~G~l~Gg~y~G~~f~AG~Ga~-eayiEkvsR~~~FEYG~aR~fGc~GwAlcA~~~GIlF~-i~p~~~FWl~S~~a~~  174 (397)
T TIGR00882        97 NILVGALVGGLYLGFVFSAGAGAI-EAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPSIVFWLGSGFALI  174 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHCCEEEE-CCCCHHHHHHHHHHHH
T ss_conf             999999986999877873257346-88897875247984001788872137877653030030-0664145788999999


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999985311102
Q gi|254780843|r  401 IAIYGIYCCYKENN  414 (420)
Q Consensus       401 ~~~~~~~~~~~~~~  414 (420)
T Consensus       175 l~~ll~~~k~~~~~  188 (397)
T TIGR00882       175 LMLLLMVAKPKSSD  188 (397)
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99999761699872