HHsearch alignment for GI: 254780843 and conserved domain: TIGR00885
>TIGR00885 fucP L-fucose:H+ symporter permease; InterPro: IPR005275 This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by at least four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. .
Probab=100.00 E-value=1.5e-44 Score=239.64 Aligned_cols=395 Identities=29% Similarity=0.520 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998738998999999809998999999999999999999999999985262899999999764321
Q gi|254780843|r 11 CTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGC 90 (420)
Q Consensus 11 ~~~i~i~~~ff~~g~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ 90 (420)
T Consensus 3 iPF~LitSlFaLWg~ANditnpmv~~Fq~~f~~~a~~aaLvQ~AFYgGYf~~aiPAa~f~~k~SYKAGillGL~LYA~GA 82 (427)
T TIGR00885 3 IPFVLITSLFALWGFANDITNPMVKAFQKVFELTAFEAALVQVAFYGGYFIMAIPAALFIKKLSYKAGILLGLALYALGA 82 (427)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31699998999998875002157999998840655420266666762012356558999987346888999899999988
Q ss_pred HCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 00000013202467899988777567888765310000123035788776644311000034547888886412342046
Q gi|254780843|r 91 ILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPN 170 (420)
Q Consensus 91 ll~~~a~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 170 (420)
T Consensus 83 fLFwPAa~~~~y~~FLv~lfIlt~GL~fLET~aNPyil~mG~e~tatrRLNlAQsFNp~Gsi~g~~va~~lil~nl~~~~ 162 (427)
T TIGR00885 83 FLFWPAAEIEEYTLFLVGLFILTAGLGFLETAANPYILVMGDEETATRRLNLAQSFNPLGSIIGMVVAQQLILSNLESQS 162 (427)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 86313775235127999999999626666424286376127888421022256302157899999999898863288766
Q ss_pred HHHH---------HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC-----HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 7765---------5555778988864200112110013455554321012310-----1233210001111222111111
Q gi|254780843|r 171 TSML---------ADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSF-----ADHKRNHISFLKTLDILANPRF 236 (420)
Q Consensus 171 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 236 (420)
T Consensus 163 ~D~~Gnlif~~ls~~e~~aik~sdla~~~~PY~iig~vvlav~llI~l~K~Pa~qsDn~~~a~qisF~~~lsRla~~~~y 242 (427)
T TIGR00885 163 QDVLGNLIFDKLSEEELSAIKESDLASVRTPYLIIGLVVLAVLLLIRLTKMPALQSDNHEDAKQISFSASLSRLARKRKY 242 (427)
T ss_pred CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 42578789884297888886465576661238999999999999985413774225772003465505899999864246
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHH----HHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 10001110001355677899998754201---2221012----4688899998764310011111100000000012455
Q gi|254780843|r 237 TMGAVCIFLYVGAEVAIGSIMANYLMRHD---TLHLDGI----SAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFA 309 (420)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (420)
T Consensus 243 RegViAQffYVGvQi~CWtfii~Ya~rl~~~~~~G~~~~saevlsqqy~i~aMviF~isRFi~T~l~~yl~a~k~L~~~A 322 (427)
T TIGR00885 243 REGVIAQFFYVGVQIMCWTFIIQYAVRLIFGKTAGFAAKSAEVLSQQYNIVAMVIFIISRFIGTFLLKYLAAEKLLMLYA 322 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 89999999998789999999999765614784320013457888753456678777667889999998628658999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 5545676899622336899999999999999999999999963015656999999999999999999999999961----
Q gi|254780843|r 310 TTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSGIICTTISGGVIIPLGVGYLVDIA---- 385 (420)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~p~i~G~l~d~~---- 385 (420)
T Consensus 323 i~g~~~~Lg~iF~~g~~GLycL~l~SafMsl~fPTIygialkglg~d~k~GaaglvMaI~GG~~~pPl~g~iiD~~E~~~ 402 (427)
T TIGR00885 323 IIGMLLILGSIFLDGVVGLYCLVLVSAFMSLMFPTIYGIALKGLGEDTKYGAAGLVMAIIGGGILPPLQGFIIDQKEVAA 402 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHEEECHHHHHC
T ss_conf 99999999999980248999999997321032246899985146400001057899988610320101404223378603
Q ss_pred --HHHHHHHHHHHHHHHHHHHH
Q ss_conf --23799999999999999999
Q gi|254780843|r 386 --SLRDAMFVPAVCYIIIAIYG 405 (420)
Q Consensus 386 --g~~~~~~~~~~~~~~~~~~~ 405 (420)
T Consensus 403 ~pavn~sfilPl~CF~VI~iyg 424 (427)
T TIGR00885 403 LPAVNVSFILPLLCFVVIIIYG 424 (427)
T ss_pred CCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8886588998999998888630