HHsearch alignment for GI: 254780843 and conserved domain: TIGR00890

Probab=99.95  E-value=2.9e-25  Score=142.96  Aligned_cols=382  Identities=12%  Similarity=0.043  Sum_probs=248.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             9999999999999999873899899999980999-----89999999999999999999999999852628999999997
Q gi|254780843|r   11 CTKIYIFILFFLFGGITSLNSILVPKLQNSFSLT-----YLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLI   85 (420)
Q Consensus        11 ~~~i~i~~~ff~~g~~~~~~~~~~p~l~~~~~~s-----~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~   85 (420)
T Consensus         4 ~~~~g~~~m~~~~g~~Y-tW~L~~~~l~~~l~~~~~Pdm~~a~~~~ft~~~~~~a~s~~~gG~~~d~fGpR~~~mlggil   82 (429)
T TIGR00890         4 LVLVGTVIMCFVSGYVY-TWTLLAPPLGRKLGVKMYPDMVSAVAVSFTLLLIVLAVSQPVGGKLADKFGPRLVAMLGGIL   82 (429)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHH
T ss_conf             99999999999999877-45544578887507888862268999999999999862222124221000663889999999


Q ss_pred             HHHHH--HCCHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             64321--00000013202467899988-7775678887653100001230357887766443110000345478888864
Q gi|254780843|r   86 MSLGC--ILFTATIEITTFKVFLIALC-ILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLM  162 (420)
Q Consensus        86 ~~i~~--ll~~~a~~~~~~~~~~~~~~-i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  162 (420)
T Consensus        83 ~~~G~Gs~~~a~---~~s~~~LyL~~G~l~s~G~Gi~Yg~al~tA~kWFPD-k~GLA~G~~~~GyGlGs~~~~PL~~~~~  158 (429)
T TIGR00890        83 LGLGFGSIFAAL---ADSLAALYLTYGVLASAGVGIVYGIALSTAVKWFPD-KRGLASGIIIGGYGLGSLVLSPLITSVL  158 (429)
T ss_pred             HHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             997688999875---021899999987887799999999897203122655-3038999999986478886303577633


Q ss_pred             H---CCCCCHHHHH--------HHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             1---2342046776--------5555577898886420011211-00134555543210123101233210001111222
Q gi|254780843|r  163 L---GNLASPNTSM--------LADTMKDYQTDTARVISQMYLV-LAIILFLATWLCWMQRNSFADHKRNHISFLKTLDI  230 (420)
Q Consensus       163 ~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (420)
T Consensus       159 ~PldyrvndqGfftqedl~~~~~~aF~~~G~~~l~~i~~~a~~~~~P~~~WlPkG~~~E~~~~~~~~~~~~~~d~~~~~~  238 (429)
T TIGR00890       159 EPLDYRVNDQGFFTQEDLLEGVEAAFVYMGIVALLVIVLLAFLIKYPPGDWLPKGIHVEEEQEVKKSIEVSEKDYTVAEM  238 (429)
T ss_pred             CCHHCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             60210032564200455664579999999999999999999987078866676656520033134002300023311776


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHH
Q ss_conf             11111110001110001355677899998754201222-10124688899998764310011111100000000012455
Q gi|254780843|r  231 LANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLH-LDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFA  309 (420)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
T Consensus       239 lr~~~fWvL~~~f~~~a~~~L~~~g~~~~yg~---~L~~~~~g~l~~~vs~~~~~Ng~~R~~~G~~sDk~gr~~~m~~~~  315 (429)
T TIGR00890       239 LRTPQFWVLYVSFFLAAVSGLLLIGLLKPYGR---SLGDLDVGALVLAVSIISLFNGGGRPVLGAVSDKIGRLKTMSIVF  315 (429)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             42336999999999988899999999999888---888889999999999999999888999999974310055667776


Q ss_pred             HHHHHHHHHHHHCCHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------------HHHHHHHH
Q ss_conf             55456768996223368---9-999999999999999999999996301565-69999--------------99999999
Q gi|254780843|r  310 TTACSLVILSSYTTGFI---S-GWSLIAVGLFNSIMFPTIFSLASASLEDQA-SGGSG--------------IICTTISG  370 (420)
Q Consensus       310 ~~~~~~~~~~~~~~~~~---~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~g  370 (420)
T Consensus       316 ~isav~~~~~~~~~~~~n~V~FlA~~~~~~ft~Gg~~~lFP~l~s~~FG~~~~~~NYG~~y~A~aGyrireymntfqs~a  395 (429)
T TIGR00890       316 GISAVGMLAMLFIPKISNDVLFLALVALVAFTWGGTFSLFPSLVSDIFGPKYSAANYGLLYTAKAGYRIREYMNTFQSVA  395 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999899874228999999999842301321110221000010221453037876331368999988888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999961237999999999999
Q gi|254780843|r  371 GVIIPLGVGYLVDIASLRDAMFVPAVCYII  400 (420)
Q Consensus       371 ~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~  400 (420)
T Consensus       396 gi~gg~~~~~~~~~~G~~~~f~~~~~~~l~  425 (429)
T TIGR00890       396 GIFGGLIASLVLTEIGFKVTFLVTAALALL  425 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999888499999999999999