HHsearch alignment for GI: 254780843 and conserved domain: TIGR00898
>TIGR00898 2A0119 cation transport protein; InterPro: IPR004749 Organic cation transport proteins belong to this group. The protein from human is a sodium-dependent, high affinity carnitine transporter that also transports organic cations without the involvement of sodium. It is involved in the active cellular uptake of carnitine.; GO: 0015075 ion transmembrane transporter activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=98.48 E-value=3.2e-05 Score=42.45 Aligned_cols=126 Identities=14% Similarity=0.208 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 012468889999876431001111110000000001245555456768996223368999-9999999999999999999
Q gi|254780843|r 270 DGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGW-SLIAVGLFNSIMFPTIFSL 348 (420)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ 348 (420)
T Consensus 138 ~~~~~~L~~s~~~~G~L~Gs~~~G~lsDrfGRk~~L~~s~l~~~~~g~~~a~SP~~~~~~vfR~L~G~~~~g~~~~~~~L 217 (557)
T TIGR00898 138 DAWKVDLTQSLFFVGVLLGSLVLGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIAGIWVVAVVL 217 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf 25776688999999999868888778635204899999999998878651275689999999999613100202577776
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99630156569999---9999999999999999999996123799999999
Q gi|254780843|r 349 ASASLEDQASGGSG---IICTTISGGVIIPLGVGYLVDIASLRDAMFVPAV 396 (420)
Q Consensus 349 ~~~~~~~~~~~~~~---~~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~ 396 (420)
T Consensus 218 ~~E~~~~~~R~~~~~lG~~~~~~~G~~~L~l~AY~~~~S-gWR~L~l~~s~ 267 (557)
T TIGR00898 218 NTEFLPKKQRAIVGILGIQVFFSLGLLLLPLVAYFIPDS-GWRWLQLAVSL 267 (557)
T ss_pred EEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
T ss_conf 775327366157661035888887699987788653785-58999999998