HHsearch alignment for GI: 254780843 and conserved domain: TIGR00901
>TIGR00901 2A0125 AmpG-related permease; InterPro: IPR004752 The signal transducer encoded by ampG is essential for induction of chromosomal AmpC beta-lactamase in Escherichia coli by beta-lactam antibiotics and 'unspecific' inducers . The ampG protein probably acts as a permease in the beta-lactamase induction system and in peptidoglycan recycling..
Probab=97.33 E-value=0.005 Score=31.47 Aligned_cols=138 Identities=10% Similarity=0.025 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----C----HHHH-HHHHHHHHHHHHHCCHHC
Q ss_conf 87389989999998099989999999999999999999999999852-----6----2899-999999764321000000
Q gi|254780843|r 27 TSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY-----G----YIKG-ICTGLLIMSLGCILFTAT 96 (420)
Q Consensus 27 ~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~-----G----rr~~-l~~~~~~~~i~~ll~~~a 96 (420)
T Consensus 4 l~l~~~~lp~wL~~~~v~~~~iG~~S~~-~lpY-slKfLWsPl~D~~~~~~~G~~~GRRrsWl~~tq~~L~~~l~~~s~~ 81 (531)
T TIGR00901 4 LMLVGNTLPVWLRSKNVSLKTIGFFSLV-GLPY-SLKFLWSPLLDTYYLPFLGKLLGRRRSWLVLTQVLLLLLLLILSFL 81 (531)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHH-HHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1107632887740206788899999999-9999-9999972013622456366414530468999999999999999722
Q ss_pred CC---------CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 13---------20246789998877756788876531000012303578877664431100003454788888641234
Q gi|254780843|r 97 IE---------ITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNL 166 (420)
Q Consensus 97 ~~---------~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 166 (420)
T Consensus 82 ~P~~~~~tDD~~~~l~~l~~~a~L~~F~SAtQDI~~DA~r~~il~~e~lG~~s~~~~~Gyr~g~Ll~~~l~L~La~~~~ 160 (531)
T TIGR00901 82 DPRLLSKTDDRSTDLPLLAGLAFLIAFFSATQDIVLDAWRLEILSDEELGYGSTIYIVGYRVGMLLAGSLALVLASALF 160 (531)
T ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8620003678874299999999999998542557877466621684556788999999999999988799999974764