HHsearch alignment for GI: 254780843 and conserved domain: TIGR00903
>TIGR00903 2A0129 major facilitator 4 family protein; InterPro: IPR005277 The MFS is a very old, large and diverse superfamily that includes several hundred sequenced members. They catalyze uniport, solute:cation (H+ or Na+) symport and/or solute:H+ or solute:solute antiport. Most are of 400-600 amino acyl residues in length and possess either 12 or 14 putative transmembrane a-helical spanners. They exhibit specificity for sugars, polyols, drugs, neurotransmitters, Krebs cycle metabolites, phosphorylated glycolytic intermediates, amino acids, peptides, osmolites, nucleosides, organic anions, inorganic anions, etc. They are found ubiquitously in all three kingdoms of living organisms. The generalized transport reactions catalyzed by MFS porters are: (1)Uniport: S (out) S (in). (2)Symport: S (out) + [H+ or Na+] (out) ---> S (in) + [H+ or Na+] (in). (3)Antiport: S1 (out) + S2 (in) S1 (in) + S2 (out), (S1 may be H+ or a solute) This family of proteins are uncharacterised proteins from archaea, which may be major facilitators. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. .
Probab=99.58 E-value=2.2e-11 Score=73.32 Aligned_cols=308 Identities=13% Similarity=0.087 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHH
Q ss_conf 89989999998099989999999999999999999999999852628999999997643210000001320246789998
Q gi|254780843|r 30 NSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIAL 109 (420)
Q Consensus 30 ~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ll~~~a~~~~~~~~~~~~~ 109 (420)
T Consensus 10 ySPV~~LV~E~~~VS~E~~GLLA~~YP~~FL~LTIPSG~LLDR~-F~~Wl~~G~~~T~~A~~~RL~~--Pl~Y~WLL~CQ 86 (368)
T TIGR00903 10 YSPVLSLVAEDLDVSKELLGLLAVVYPIAFLILTIPSGLLLDRD-FKRWLLVGVLLTFAAAVLRLLD--PLSYEWLLVCQ 86 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_conf 10035776522344388898999999999999860422443266-7689999999999889987305--00078999999
Q ss_pred HHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87775678887653100001230357887766443110000345478888864123420467765555577898886420
Q gi|254780843|r 110 CILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTARVI 189 (420)
Q Consensus 110 ~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (420)
T Consensus 87 ~~~ALGQPlLLN~F~P~AS~~~~-ERR~~V~S~LSl~MYLG~~yAL~~G~~~YT~~GL~~L~~P~A~V~~A~~~L~---- 161 (368)
T TIGR00903 87 LLAALGQPLLLNAFVPAASTLRE-ERRDLVVSLLSLAMYLGIVYALAAGLKLYTALGLTLLILPIAVVAAASVVLV---- 161 (368)
T ss_pred HHHHHCCHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 99861541577621230013351-3578999999999999999998757999998558999878999988899999----
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 01121100134555543210123101233210001111222111111100011100013556778999987542012221
Q gi|254780843|r 190 SQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLHL 269 (420)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (420)
T Consensus 162 --------------~~~~~A~~~~~~~~lGfkd~V~~F~~~~~R~DLW~~G~ILGlGVA~FDNl~~WL~~AL~~---~GL 224 (368)
T TIGR00903 162 --------------LIALRALRFTKAESLGFKDVVKEFRLLLKRKDLWLLGLILGLGVALFDNLAIWLEAALRS---KGL 224 (368)
T ss_pred --------------HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCC
T ss_conf --------------986311110012346458899987886403238989899976899987899998762071---461
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHH-HHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0124688899998764310011111100000000012455-554567689962-23368999999999999999999999
Q gi|254780843|r 270 DGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFA-TTACSLVILSSY-TTGFISGWSLIAVGLFNSIMFPTIFS 347 (420)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 347 (420)
T Consensus 225 ~~~A-G~~VALA~~~GL~GVAVIP~RV~R~~LR~~Y~R~~~~L~A~ly~~LAl~~~~~~~~~l~~~~GL~MLPAY~~IM~ 303 (368)
T TIGR00903 225 EDVA-GDAVALALLLGLVGVAVIPDRVVRVNLRSIYIRAIALLVAVLYLILALELSRLLLFALLGLAGLLMLPAYAVIMD 303 (368)
T ss_pred HHHH-HHHHHHHHHHHHCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1210-249999999824013144873033006899999999999999999998888999999875778886115889998
Q ss_pred HHHHHHHHH-HHHHHHH
Q ss_conf 999630156-5699999
Q gi|254780843|r 348 LASASLEDQ-ASGGSGI 363 (420)
Q Consensus 348 ~~~~~~~~~-~~~~~~~ 363 (420)
T Consensus 304 WI~~y~D~~~~G~A~G~ 320 (368)
T TIGR00903 304 WISKYYDKRLQGKAAGA 320 (368)
T ss_pred HHHHHHCCCCCCCCCCH
T ss_conf 76454064204430215