HHsearch alignment for GI: 254780843 and conserved domain: TIGR01299

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2; InterPro: IPR005988 SV2 proteins are abundant synaptic vesicle proteins expressed in two major (SV2A and SV2B) and one minor isoform (SV2C) that resemble transporter proteins. SV2B knockout mice are phenotypically normal while SV2A- and SV2A/SV2B double knockout mice exhibit severe seizures and die postnatally. Without SV2 proteins, presynaptic Ca^2+ accumulation during consecutive action potentials causes abnormal increases in neurotransmitter release that destabilize synaptic circuits and induce epilepsy . ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=98.71  E-value=1.8e-09  Score=63.78  Aligned_cols=143  Identities=10%  Similarity=0.067  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHCCCCCHHHH
Q ss_conf             99873899899999980999899999999999999999999999998526289999999976432100000013202467
Q gi|254780843|r   25 GITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKV  104 (420)
Q Consensus        25 ~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ll~~~a~~~~~~~~  104 (420)
T Consensus       181 ~~~~~~g~~~p~~~~~~c~~~~~~g~~g~~~~~g~~~g~~~wgg~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~g~  257 (742)
T TIGR01299       181 VEVFVVGFVLPSAEKDLCLPDSGKGWLGLIVYLGLLVGAFLWGGLADKLGRKQCLLICLSVNGFFAFL---SSFVQGYGF  257 (742)
T ss_pred             CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEHHHHHHHHH---HHHHHHHHH
T ss_conf             21454321104443322024677632578888888887765210233204300023321012578888---877543247


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             899988777567888765310000123035788776644311000034547888886412342046
Q gi|254780843|r  105 FLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPN  170 (420)
Q Consensus       105 ~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  170 (420)
T Consensus       258 ~~~c~~~~g~g~gg~~p~~~~~~~~~~~~~~~g~~~~w~c~~w~~gg~~~~~~~w~~~p~~gw~~~  323 (742)
T TIGR01299       258 FLLCRLLSGFGIGGAIPTVFSYFAEFLAREKRGEHLSWLCLFWLIGGVYAAALAWAIIPHYGWSFS  323 (742)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             887887622566630468888888887542035325678788875346666555443102453212