HHsearch alignment for GI: 254780843 and conserved domain: TIGR01299
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2; InterPro: IPR005988 SV2 proteins are abundant synaptic vesicle proteins expressed in two major (SV2A and SV2B) and one minor isoform (SV2C) that resemble transporter proteins. SV2B knockout mice are phenotypically normal while SV2A- and SV2A/SV2B double knockout mice exhibit severe seizures and die postnatally. Without SV2 proteins, presynaptic Ca^2+ accumulation during consecutive action potentials causes abnormal increases in neurotransmitter release that destabilize synaptic circuits and induce epilepsy . ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=98.71 E-value=1.8e-09 Score=63.78 Aligned_cols=143 Identities=10% Similarity=0.067 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHCCCCCHHHH
Q ss_conf 99873899899999980999899999999999999999999999998526289999999976432100000013202467
Q gi|254780843|r 25 GITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKV 104 (420)
Q Consensus 25 ~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ll~~~a~~~~~~~~ 104 (420)
T Consensus 181 ~~~~~~g~~~p~~~~~~c~~~~~~g~~g~~~~~g~~~g~~~wgg~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~g~ 257 (742)
T TIGR01299 181 VEVFVVGFVLPSAEKDLCLPDSGKGWLGLIVYLGLLVGAFLWGGLADKLGRKQCLLICLSVNGFFAFL---SSFVQGYGF 257 (742)
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEHHHHHHHHH---HHHHHHHHH
T ss_conf 21454321104443322024677632578888888887765210233204300023321012578888---877543247
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 899988777567888765310000123035788776644311000034547888886412342046
Q gi|254780843|r 105 FLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPN 170 (420)
Q Consensus 105 ~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 170 (420)
T Consensus 258 ~~~c~~~~g~g~gg~~p~~~~~~~~~~~~~~~g~~~~w~c~~w~~gg~~~~~~~w~~~p~~gw~~~ 323 (742)
T TIGR01299 258 FLLCRLLSGFGIGGAIPTVFSYFAEFLAREKRGEHLSWLCLFWLIGGVYAAALAWAIIPHYGWSFS 323 (742)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 887887622566630468888888887542035325678788875346666555443102453212