HHsearch alignment for GI: 254780843 and conserved domain: pfam01306
>pfam01306 LacY_symp LacY proton/sugar symporter. This family is closely related to the sugar transporter family.
Probab=99.97 E-value=9.6e-27 Score=150.36 Aligned_cols=378 Identities=12% Similarity=0.048 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--HHH-CCHHC
Q ss_conf 999999873899899999-98099989999999999999999999999999852628999999997643--210-00000
Q gi|254780843|r 21 FLFGGITSLNSILVPKLQ-NSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSL--GCI-LFTAT 96 (420)
Q Consensus 21 f~~g~~~~~~~~~~p~l~-~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i--~~l-l~~~a 96 (420)
T Consensus 17 f~yF~~~g~~~pf~~lwL~~~~Gls~~~IGil~s~~~~~~il~qp~~G~lsDk~g~rk~ll~~i~~~l~l~~~ffi~~~~ 96 (413)
T pfam01306 17 FFYFFIMSAYFPFFPIWLHDVNHLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLRKHLLWCITGLLVLFAPFFIYVFG 96 (413)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999899999777579899999999999999999982789986034455018999999999999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 1320246789998877756788876531000012303578--87766443110000345478888864123420467765
Q gi|254780843|r 97 IEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTA--VSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSML 174 (420)
Q Consensus 97 ~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 174 (420)
T Consensus 97 pll~~--~~~l~~lv~~i~~~~~~~~~~pl~ea~~~~~sr~~~~~YGriRlwGSiGfai~a~~~G~l~~~~p~~~-f-~~ 172 (413)
T pfam01306 97 PLLQS--NILVGAIVGGVYLGFVFSAGAGAIEAYIEKVSRRSNFEYGKARMFGCVGWALCASIAGILFSIDPQIV-F-WL 172 (413)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH-H-HH
T ss_conf 89899--99999999999999998554279999999998763774213688999999999998678875285289-9-99
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55557789888642001121100134555543210123101233210001111222111111100011100013556778
Q gi|254780843|r 175 ADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIG 254 (420)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T Consensus 173 ~s~~~~i~-~ll~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~f~l~v~g~~~~y~v~d 240 (413)
T pfam01306 173 GSGFALIL-ALLLMFA-----------KPDKSSSAIVADALGANKSAFSLRLALELFRMPKFWVFVLYVVGVACVYDVFD 240 (413)
T ss_pred HHHHHHHH-HHHHHHC-----------CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999-9999980-----------78764102331010124577647779999615479999999999999988777
Q ss_pred HHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH-HHH
Q ss_conf 99998-7542012221012468889999876431001111110000000001245555456768996223368999-999
Q gi|254780843|r 255 SIMAN-YLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGW-SLI 332 (420)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 332 (420)
T Consensus 241 ~~f~~f~~~~~~~~~~g~~~~G~l~s~~v~~E~~~m~~~~~l~~R~G~k~~Llla~~i~~iR~~~~~~~~~~~~ii~~ql 320 (413)
T pfam01306 241 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRILGSSFATTALEVVILKM 320 (413)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 77899999996342768431219999999999999999899998708398999999999999999743230699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999630156569-9999--9999999999999999999961237999999999999999999853
Q gi|254780843|r 333 AVGLFNSIMFPTIFSLASASLEDQASG-GSGI--ICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCC 409 (420)
Q Consensus 333 ~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (420)
T Consensus 321 LH~~t~~l~~va~~kyI~~~f~~rl~aT~~~v~~~~~~g~~~~i~s~~~G~l~D~~G~~~ty~il~~i~l~~tiis~f~l 400 (413)
T pfam01306 321 LHMFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFSKQLAMILLSTLAGIMYDSIGFQGAYLVLGGIVLSFTLISVFTL 400 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 99989999999999999986793022149999999999888998611288899970378999999999999999983266
Q ss_pred HHHHC
Q ss_conf 11102
Q gi|254780843|r 410 YKENN 414 (420)
Q Consensus 410 ~~~~~ 414 (420)
T Consensus 401 ~~~~~ 405 (413)
T pfam01306 401 SGSGP 405 (413)
T ss_pred CCCCC
T ss_conf 58996