HHsearch alignment for GI: 254780843 and conserved domain: pfam02487
>pfam02487 CLN3 CLN3 protein. This is a family of proteins from the CLN3 gene. A missense mutation of glutamic acid (E) to lysine (K) at position 295 in the human protein has been implicated in Juvenile neuronal ceroid lipofuscinosis (Batten disease).
Probab=98.85 E-value=2.2e-06 Score=48.33 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHH-------------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998738-----9989999998-------------------09998999999999999999999999999985
Q gi|254780843|r 17 FILFFLFGGITSLN-----SILVPKLQNS-------------------FSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQR 72 (420)
Q Consensus 17 ~~~ff~~g~~~~~~-----~~~~p~l~~~-------------------~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr 72 (420)
T Consensus 2 ~vaFwl~Gl~NN~~YVvilSAA~-Di~~~~~~~~~~~~~~~~~~~~~~~~c~~~~t~~vLlAdi~P~l~~kl~aP~fi~~ 80 (409)
T pfam02487 2 YVAFWLLGLCNNFGYVVMLSAAE-DILSHQRGHVDSDPPPTCLPHSTRRECKSLSTAAVLLADILPSLIIKLTAPFFIHR 80 (409)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 65489888741015431496599-88601025667777765555433334466635588887678899999986773331
Q ss_pred HCHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 26289999999976432100000013202467899988777567888765310000123035788776644311000034
Q gi|254780843|r 73 YGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTA 152 (420)
Q Consensus 73 ~Grr~~l~~~~~~~~i~~ll~~~a~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 152 (420)
T Consensus 81 vpy~~Ri~~~~~ls~~g~l~Va~s---~~~~~~L~GVvlas~ssg~GE~tfL~lt~~y-~~----~~lsawsSGTG~AGl 152 (409)
T pfam02487 81 FPFGFRVWIVILLQASSFFLVAFS---KSIAMSLAGVVFASIGSGLGEITFLALTAHY-PR----IVIAGWSSGTGGAGL 152 (409)
T ss_pred CCCHHHHHHHHHHHHHCEEEEEEE---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CH----HHHHHCCCCCCCHHH
T ss_conf 783099999999986126899983---6189999999988633130299999998545-71----454300356671567
Q ss_pred HHHHHHHHHHHC
Q ss_conf 547888886412
Q gi|254780843|r 153 IFPYIGSVLMLG 164 (420)
Q Consensus 153 ~g~~~~~~l~~~ 164 (420)
T Consensus 153 ~Gs~~Y~~lT~~ 164 (409)
T pfam02487 153 IGAFSYAFLTQI 164 (409)
T ss_pred HHHHHHHHHHHH
T ss_conf 778899988733