HHsearch alignment for GI: 254780843 and conserved domain: pfam03209
>pfam03209 PUCC PUCC protein. This protein is required for high-level transcription of the PUC operon.
Probab=99.75 E-value=8.1e-15 Score=90.58 Aligned_cols=352 Identities=10% Similarity=0.006 Sum_probs=192.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----HH-HHHHHHHHHHHHHHHCCHHCCC-----------
Q ss_conf 999980999899999999999999999999999998526-----28-9999999976432100000013-----------
Q gi|254780843|r 36 KLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYG-----YI-KGICTGLLIMSLGCILFTATIE----------- 98 (420)
Q Consensus 36 ~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G-----rr-~~l~~~~~~~~i~~ll~~~a~~----------- 98 (420)
T Consensus 5 VMIvEL~~pA~lv~~lval~~lva-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~a~~a~~~l~~~~~~~~~ 83 (402)
T pfam03209 5 VMIVELAVPASLVGIMIALPLLVA-PFRALIGFRSDTHRSALGWKRTPYIWLGTLLQAGGLAIMPFALIVLSGQGEAVGA 83 (402)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 679971227899999999999999-9999975452577666878862678998999999999999999998567422333
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf --202467899988777567888765310000123035788776644311000034547888886412342046776555
Q gi|254780843|r 99 --ITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLAD 176 (420)
Q Consensus 99 --~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 176 (420)
T Consensus 84 ~~~~g~~~a~laF~l~Glgv~a~~T~~lALlad~t~e~~R~~~v~i~w~Mli~G~ivtA~i~g~lL~~fs~~rLi~v~~~ 163 (402)
T pfam03209 84 PTWAGLILAALAFLLVGLGVHMSQTVGLALATDLADEEDRPKVVGLMYVMLLVGIIVSAITVGWLLADFSPARLIQVIQG 163 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 15999999999999996566275578999998538865669999999999999999999999997564699999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55778988864200112110013455554321012310123321000111122211111110001110001355677899
Q gi|254780843|r 177 TMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIGSI 256 (420)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (420)
T Consensus 164 ~a~i~~~l~~~A~w-------------g~E~r~~~~~~~~~~~~~~f~~a~~~~~~~p~ar~F~~fv~l~~la~~mQD~i 230 (402)
T pfam03209 164 VALATMVLNVIALW-------------KQEARRPSRPREEPRPEPSFLEAWLLFVAEPQARRFLFFLGLGTLAFFMQDVL 230 (402)
T ss_pred HHHHHHHHHHHHHH-------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999983-------------56667755456777789659999999983987300277999999999842012
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHCCCHHHHHHHHHHHHHHHHH----HCCHHHHHHHH
Q ss_conf 9987542012221012468889999876431001111-110000000001245555456768996----22336899999
Q gi|254780843|r 257 MANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGT-WILSRFSAEKTLCAFATTACSLVILSS----YTTGFISGWSL 331 (420)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 331 (420)
T Consensus 231 LEPygg--~VFGmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~~li~a~~~~~~~~l~~~v 308 (402)
T pfam03209 231 LEPYGG--EVFGLTVGETTKLTAFFAGGTLVGFGLAGRVLSRGLDPFRMAGWGCAVGLPAFLALIFSALLGNVALFVAGT 308 (402)
T ss_pred CCCCCH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 476402--560778657699999998899999999999986577758899999999999999999987436513899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q ss_conf 999999999999999999963015-656999999-999999999999999999961---------237999999999999
Q gi|254780843|r 332 IAVGLFNSIMFPTIFSLASASLED-QASGGSGII-CTTISGGVIIPLGVGYLVDIA---------SLRDAMFVPAVCYII 400 (420)
Q Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~g~~i~p~i~G~l~d~~---------g~~~~~~~~~~~~~~ 400 (420)
T Consensus 309 ~l~G~g~G~f~v~al~~mM~la~~~~aG~~mG~WGaaQA~A~Glg~~~Gg~~~Dl~~~l~~~~~~aY~~VF~lEa~l~~~ 388 (402)
T pfam03209 309 LLIGFGAGLFGHATLTAMMDLAPEERAGTALGAWGAAQATAAGLAILLGGVLRDLVRALAGNPATAYGLVFALEALLLII 388 (402)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99997021889999999981688764158987979999999799999999999999986169752789999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780843|r 401 IAI 403 (420)
Q Consensus 401 ~~~ 403 (420)
T Consensus 389 a~~ 391 (402)
T pfam03209 389 TIF 391 (402)
T ss_pred HHH
T ss_conf 999