RPSBLAST alignment for GI: 254780843 and conserved domain: TIGR00885

>gnl|CDD|162089 TIGR00885, fucP, L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. Length = 410
 Score =  196 bits (500), Expect = 9e-51
 Identities = 121/409 (29%), Positives = 203/409 (49%), Gaps = 23/409 (5%)

Query: 14  IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY 73
             I  LF L+G    + + +VP+ Q +F+LT  QA LV++ F+  YF  +IPA +F+++ 
Sbjct: 6   ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65

Query: 74  GYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDP 133
            Y  GI  GL + +LG  LF    EI  + +FL+ L IL  G+  ++ A NP+I ++G  
Sbjct: 66  SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE 125

Query: 134 NTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD-----YQTDTARV 188
           +TA  RL  AQ FN  G+ I   +   L+L NL   +  +L D +        +      
Sbjct: 126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL-DKLSPEELSAIKHSDLAS 184

Query: 189 ISQMYLVLAIILFLATWLCWMQRNSFADHKRNH-ISFLKTLDILAN-PRFTMGAVCIFLY 246
           +   Y+++  ++     L  + +    +H     ISF  +L  LA    +  G +  F Y
Sbjct: 185 VQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFY 244

Query: 247 VGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAM----IGRFIGTWILSRFSAE 302
           VG ++   +    +++++    + G++AG   A Y   AM    I RFIGTW++S  +A 
Sbjct: 245 VGVQIMCWT----FIIQYAVRLIPGMTAGF-AANYNIGAMVIFFISRFIGTWLISYLAAH 299

Query: 303 KTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSG 362
           K L A+A    +L + S +  G +  + L     F S+MFPTI+ +A   L      G+ 
Sbjct: 300 KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAA 359

Query: 363 IICTTISGGVIIPLGVGYLVDIASLRD------AMFVPAVCYIIIAIYG 405
            +   I GG I+P   G+++D+  +        +  +P +C+ +I IYG
Sbjct: 360 GLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIFIYG 408