RPSBLAST alignment for GI: 254780843 and conserved domain: TIGR00885
>gnl|CDD|162089 TIGR00885, fucP, L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. Length = 410
Score = 196 bits (500), Expect = 9e-51
Identities = 121/409 (29%), Positives = 203/409 (49%), Gaps = 23/409 (5%)
Query: 14 IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY 73
I LF L+G + + +VP+ Q +F+LT QA LV++ F+ YF +IPA +F+++
Sbjct: 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65
Query: 74 GYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDP 133
Y GI GL + +LG LF EI + +FL+ L IL G+ ++ A NP+I ++G
Sbjct: 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE 125
Query: 134 NTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD-----YQTDTARV 188
+TA RL AQ FN G+ I + L+L NL + +L D + +
Sbjct: 126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL-DKLSPEELSAIKHSDLAS 184
Query: 189 ISQMYLVLAIILFLATWLCWMQRNSFADHKRNH-ISFLKTLDILAN-PRFTMGAVCIFLY 246
+ Y+++ ++ L + + +H ISF +L LA + G + F Y
Sbjct: 185 VQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFY 244
Query: 247 VGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAM----IGRFIGTWILSRFSAE 302
VG ++ + +++++ + G++AG A Y AM I RFIGTW++S +A
Sbjct: 245 VGVQIMCWT----FIIQYAVRLIPGMTAGF-AANYNIGAMVIFFISRFIGTWLISYLAAH 299
Query: 303 KTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSG 362
K L A+A +L + S + G + + L F S+MFPTI+ +A L G+
Sbjct: 300 KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAA 359
Query: 363 IICTTISGGVIIPLGVGYLVDIASLRD------AMFVPAVCYIIIAIYG 405
+ I GG I+P G+++D+ + + +P +C+ +I IYG
Sbjct: 360 GLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIFIYG 408