BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780843|ref|YP_003065256.1| glucose/galactose transporter
[Candidatus Liberibacter asiaticus str. psy62]
         (420 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 420

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/420 (100%), Positives = 420/420 (100%)

Query: 1   MKDTIARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYF 60
           MKDTIARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYF
Sbjct: 1   MKDTIARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYF 60

Query: 61  FFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQ 120
           FFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQ
Sbjct: 61  FFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQ 120

Query: 121 VALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD 180
           VALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD
Sbjct: 121 VALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD 180

Query: 181 YQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGA 240
           YQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGA
Sbjct: 181 YQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGA 240

Query: 241 VCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFS 300
           VCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFS
Sbjct: 241 VCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFS 300

Query: 301 AEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGG 360
           AEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGG
Sbjct: 301 AEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGG 360

Query: 361 SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENNFEQNTP 420
           SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENNFEQNTP
Sbjct: 361 SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENNFEQNTP 420


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 25.8 bits (55), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 131 GDPNTAVSRLTFAQFFNSLGTAI 153
           GDP+  ++ + F +FFN++  AI
Sbjct: 279 GDPSGTIANMRFNRFFNNIPMAI 301


>gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase subunit IV [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 119

 Score = 23.5 bits (49), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 304 TLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIF 346
            LCA A     LV     +T    GWS++A+ +F  IM    F
Sbjct: 54  VLCAIAQIIVHLVFFLHMSTKVEDGWSIMAM-IFTIIMVAICF 95


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.142    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,503
Number of Sequences: 1233
Number of extensions: 9854
Number of successful extensions: 35
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 5
length of query: 420
length of database: 328,796
effective HSP length: 76
effective length of query: 344
effective length of database: 235,088
effective search space: 80870272
effective search space used: 80870272
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 39 (19.6 bits)