BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus str. psy62] (420 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/420 (100%), Positives = 420/420 (100%) Query: 1 MKDTIARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYF 60 MKDTIARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYF Sbjct: 1 MKDTIARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYF 60 Query: 61 FFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQ 120 FFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQ Sbjct: 61 FFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQ 120 Query: 121 VALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD 180 VALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD Sbjct: 121 VALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD 180 Query: 181 YQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGA 240 YQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGA Sbjct: 181 YQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGA 240 Query: 241 VCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFS 300 VCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFS Sbjct: 241 VCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFS 300 Query: 301 AEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGG 360 AEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGG Sbjct: 301 AEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGG 360 Query: 361 SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENNFEQNTP 420 SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENNFEQNTP Sbjct: 361 SGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENNFEQNTP 420 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 16/23 (69%) Query: 131 GDPNTAVSRLTFAQFFNSLGTAI 153 GDP+ ++ + F +FFN++ AI Sbjct: 279 GDPSGTIANMRFNRFFNNIPMAI 301 >gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase subunit IV [Candidatus Liberibacter asiaticus str. psy62] Length = 119 Score = 23.5 bits (49), Expect = 6.1, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 304 TLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIF 346 LCA A LV +T GWS++A+ +F IM F Sbjct: 54 VLCAIAQIIVHLVFFLHMSTKVEDGWSIMAM-IFTIIMVAICF 95 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.331 0.142 0.437 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,503 Number of Sequences: 1233 Number of extensions: 9854 Number of successful extensions: 35 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 5 length of query: 420 length of database: 328,796 effective HSP length: 76 effective length of query: 344 effective length of database: 235,088 effective search space: 80870272 effective search space used: 80870272 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 39 (19.6 bits)