Query         gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 113
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 17:13:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780844.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1bkb_A Translation initiation  10.3      49  0.0015   15.1  -0.7   16   68-83     54-69  (71)
  2 >3fy4_A 6-4 photolyase; DNA re   8.3      85  0.0025   13.7  -0.1   23   34-56     27-49  (85)
  3 >2imu_A Structural polyprotein   8.0 1.3E+02  0.0038   12.7   0.7   11   53-63     32-42  (46)
  4 >1n00_A Annexin GH1; membrane-   7.6 1.4E+02  0.0042   12.5   0.8   22   43-64      8-29  (163)
  5 >3f7f_A Nucleoporin NUP120; nu   7.4      27 0.00079   16.6  -3.0   41   30-70      1-41  (56)
  6 >1iz6_A Initiation factor 5A;    6.8      85  0.0025   13.8  -0.7   16   68-83     52-67  (70)
  7 >2eif_A IF-5A, protein (eukary   6.4      92  0.0027   13.6  -0.7   16   68-83     56-71  (74)
  8 >3cpf_A Eukaryotic translation   6.4      92  0.0027   13.6  -0.7   16   68-83     52-67  (70)
  9 >2om2_B Regulator of G-protein   6.1 1.6E+02  0.0049   12.1   0.4   12   79-90     14-25  (36)
 10 >3dac_P Cellular tumor antigen   5.9 1.4E+02  0.0042   12.5   0.0    6   45-50     14-19  (26)

No 1  
>>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:1-71)
Probab=10.27  E-value=49  Score=15.09  Aligned_cols=16  Identities=31%  Similarity=0.605  Sum_probs=13.7

Q ss_pred             CCHHHCCCCCCCCCCH
Q ss_conf             2001003488655512
Q gi|254780844|r   68 EGKKRSHDVPSSSNQE   83 (113)
Q Consensus        68 egkkrshdvpsssnqe   83 (113)
                      .|+|+++-.|++.|.+
T Consensus        54 tgkK~e~~~P~~~~~~   69 (71)
T 1bkb_A           54 DGGKRTLSLPVDAQVE   69 (71)
T ss_dssp             TCCEEEEEEETTSEEE
T ss_pred             CCEEEEEEECCCCCCC
T ss_conf             6707777605765232


No 2  
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:143-195,A:291-322)
Probab=8.30  E-value=85  Score=13.74  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=19.3

Q ss_pred             CCCCCCHHHHHHHHCCCCCHHHH
Q ss_conf             58777631244432121200101
Q gi|254780844|r   34 KAPSYPTTVALNVLSPLAPLGDG   56 (113)
Q Consensus        34 kapsypttvalnvlsplaplgdg   56 (113)
                      -.|+.+.+--++..|++.|+||-
T Consensus        27 g~p~~~~~~l~~~~s~lppvgd~   49 (85)
T 3fy4_A           27 GEPSCAKSELVMSYSSLPPIGDI   49 (85)
T ss_dssp             CCCTTTTCCCCCCCSCCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             03323444334431101443333


No 3  
>>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic} (A:)
Probab=8.04  E-value=1.3e+02  Score=12.74  Aligned_cols=11  Identities=36%  Similarity=0.963  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHH
Q ss_conf             01018887534
Q gi|254780844|r   53 LGDGCEQLVGA   63 (113)
Q Consensus        53 lgdgceqlvga   63 (113)
                      .|.|..|+.|.
T Consensus        32 ~~egvd~llGD   42 (46)
T 2imu_A           32 IGEGVDYLLGD   42 (46)
T ss_dssp             HHTHHHHHHCT
T ss_pred             CHHHHHHHHCC
T ss_conf             20227887321


No 4  
>>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} (A:1-87,A:246-321)
Probab=7.64  E-value=1.4e+02  Score=12.51  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=16.2

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             4443212120010188875345
Q gi|254780844|r   43 ALNVLSPLAPLGDGCEQLVGAT   64 (113)
Q Consensus        43 alnvlsplaplgdgceqlvgat   64 (113)
                      .+.|-||..|+.|.||||--|-
T Consensus         8 ~~~vp~~vPs~sdd~e~LtKAF   29 (163)
T 1n00_A            8 TLTVPTTVPSVSEDCEQLRKAF   29 (163)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8689999999799999999983


No 5  
>>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A (A:270-325)
Probab=7.44  E-value=27  Score=16.58  Aligned_cols=41  Identities=32%  Similarity=0.293  Sum_probs=29.0

Q ss_pred             HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf             53205877763124443212120010188875345420200
Q gi|254780844|r   30 FEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGATVHSEGK   70 (113)
Q Consensus        30 fekykapsypttvalnvlsplaplgdgceqlvgatvhsegk   70 (113)
                      |.||.++.---..--|+|--+-|+|.|--|.---+|.+.|+
T Consensus         1 ~rk~es~G~ylsL~~n~L~v~LPf~NG~F~~gtL~v~~sg~   41 (56)
T 3f7f_A            1 FRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVDSSGI   41 (56)
T ss_dssp             CCCCCSCCCCEEESSSEEEEEETTTTCEEEEEEEEC-----
T ss_pred             EEECCCHHHHHHHCCEEEEEECCCCCCCEEEEEECCCCCCC
T ss_conf             22047778777530306999755678748999963477663


No 6  
>>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:1-70)
Probab=6.83  E-value=85  Score=13.76  Aligned_cols=16  Identities=38%  Similarity=0.530  Sum_probs=13.2

Q ss_pred             CCHHHCCCCCCCCCCH
Q ss_conf             2001003488655512
Q gi|254780844|r   68 EGKKRSHDVPSSSNQE   83 (113)
Q Consensus        68 egkkrshdvpsssnqe   83 (113)
                      .|+|+++-.|++.|.+
T Consensus        52 tgkk~e~~~p~s~~v~   67 (70)
T 1iz6_A           52 DGKVRSIVKPTSAEVD   67 (70)
T ss_dssp             TCCEEEEEEETTSEEE
T ss_pred             CCCEEEEEEECCCCCC
T ss_conf             7968999982788421


No 7  
>>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:1-74)
Probab=6.44  E-value=92  Score=13.57  Aligned_cols=16  Identities=38%  Similarity=0.426  Sum_probs=13.2

Q ss_pred             CCHHHCCCCCCCCCCH
Q ss_conf             2001003488655512
Q gi|254780844|r   68 EGKKRSHDVPSSSNQE   83 (113)
Q Consensus        68 egkkrshdvpsssnqe   83 (113)
                      .|+|+++-.|++.|.+
T Consensus        56 tgkk~e~~~p~s~~v~   71 (74)
T 2eif_A           56 EKVKKEFVAPTSSKVE   71 (74)
T ss_dssp             SCCEEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCCC
T ss_conf             4738988853776300


No 8  
>>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:1-70)
Probab=6.42  E-value=92  Score=13.57  Aligned_cols=16  Identities=38%  Similarity=0.511  Sum_probs=13.3

Q ss_pred             CCHHHCCCCCCCCCCH
Q ss_conf             2001003488655512
Q gi|254780844|r   68 EGKKRSHDVPSSSNQE   83 (113)
Q Consensus        68 egkkrshdvpsssnqe   83 (113)
                      .|+|+++-.|++.|.+
T Consensus        52 tgkk~e~~~p~s~~~~   67 (70)
T 3cpf_A           52 TGKKYEDICPSTHNMD   67 (70)
T ss_dssp             TCCEEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCEEE
T ss_conf             5730688835897998


No 9  
>>2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B* (B:)
Probab=6.09  E-value=1.6e+02  Score=12.14  Aligned_cols=12  Identities=50%  Similarity=0.531  Sum_probs=9.0

Q ss_pred             CCCCHHHCCCCC
Q ss_conf             555122127997
Q gi|254780844|r   79 SSNQEDQRGSPS   90 (113)
Q Consensus        79 ssnqedqrgsps   90 (113)
                      |+.-.||||.-+
T Consensus        14 s~r~dDQRGlL~   25 (36)
T 2om2_B           14 SSGAHDQRGLLR   25 (36)
T ss_dssp             TCSCCSCSSSCC
T ss_pred             HCCCCCCCCCCC
T ss_conf             165321014341


No 10 
>>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} (P:)
Probab=5.87  E-value=1.4e+02  Score=12.48  Aligned_cols=6  Identities=100%  Similarity=1.387  Sum_probs=0.0

Q ss_pred             HHHCCC
Q ss_conf             432121
Q gi|254780844|r   45 NVLSPL   50 (113)
Q Consensus        45 nvlspl   50 (113)
                      ||||||
T Consensus        14 nvlspl   19 (26)
T 3dac_P           14 NVLSPL   19 (26)
T ss_pred             CCCCCC
T ss_conf             756778


Done!