Query gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 113 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 17:13:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780844.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1bkb_A Translation initiation 10.3 49 0.0015 15.1 -0.7 16 68-83 54-69 (71) 2 >3fy4_A 6-4 photolyase; DNA re 8.3 85 0.0025 13.7 -0.1 23 34-56 27-49 (85) 3 >2imu_A Structural polyprotein 8.0 1.3E+02 0.0038 12.7 0.7 11 53-63 32-42 (46) 4 >1n00_A Annexin GH1; membrane- 7.6 1.4E+02 0.0042 12.5 0.8 22 43-64 8-29 (163) 5 >3f7f_A Nucleoporin NUP120; nu 7.4 27 0.00079 16.6 -3.0 41 30-70 1-41 (56) 6 >1iz6_A Initiation factor 5A; 6.8 85 0.0025 13.8 -0.7 16 68-83 52-67 (70) 7 >2eif_A IF-5A, protein (eukary 6.4 92 0.0027 13.6 -0.7 16 68-83 56-71 (74) 8 >3cpf_A Eukaryotic translation 6.4 92 0.0027 13.6 -0.7 16 68-83 52-67 (70) 9 >2om2_B Regulator of G-protein 6.1 1.6E+02 0.0049 12.1 0.4 12 79-90 14-25 (36) 10 >3dac_P Cellular tumor antigen 5.9 1.4E+02 0.0042 12.5 0.0 6 45-50 14-19 (26) No 1 >>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:1-71) Probab=10.27 E-value=49 Score=15.09 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.7 Q ss_pred CCHHHCCCCCCCCCCH Q ss_conf 2001003488655512 Q gi|254780844|r 68 EGKKRSHDVPSSSNQE 83 (113) Q Consensus 68 egkkrshdvpsssnqe 83 (113) .|+|+++-.|++.|.+ T Consensus 54 tgkK~e~~~P~~~~~~ 69 (71) T 1bkb_A 54 DGGKRTLSLPVDAQVE 69 (71) T ss_dssp TCCEEEEEEETTSEEE T ss_pred CCEEEEEEECCCCCCC T ss_conf 6707777605765232 No 2 >>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:143-195,A:291-322) Probab=8.30 E-value=85 Score=13.74 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.3 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHH Q ss_conf 58777631244432121200101 Q gi|254780844|r 34 KAPSYPTTVALNVLSPLAPLGDG 56 (113) Q Consensus 34 kapsypttvalnvlsplaplgdg 56 (113) -.|+.+.+--++..|++.|+||- T Consensus 27 g~p~~~~~~l~~~~s~lppvgd~ 49 (85) T 3fy4_A 27 GEPSCAKSELVMSYSSLPPIGDI 49 (85) T ss_dssp CCCTTTTCCCCCCCSCCCCCCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCC T ss_conf 03323444334431101443333 No 3 >>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic} (A:) Probab=8.04 E-value=1.3e+02 Score=12.74 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=7.9 Q ss_pred HHHHHHHHHHH Q ss_conf 01018887534 Q gi|254780844|r 53 LGDGCEQLVGA 63 (113) Q Consensus 53 lgdgceqlvga 63 (113) .|.|..|+.|. T Consensus 32 ~~egvd~llGD 42 (46) T 2imu_A 32 IGEGVDYLLGD 42 (46) T ss_dssp HHTHHHHHHCT T ss_pred CHHHHHHHHCC T ss_conf 20227887321 No 4 >>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} (A:1-87,A:246-321) Probab=7.64 E-value=1.4e+02 Score=12.51 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=16.2 Q ss_pred HHHHHCCCCCHHHHHHHHHHHH Q ss_conf 4443212120010188875345 Q gi|254780844|r 43 ALNVLSPLAPLGDGCEQLVGAT 64 (113) Q Consensus 43 alnvlsplaplgdgceqlvgat 64 (113) .+.|-||..|+.|.||||--|- T Consensus 8 ~~~vp~~vPs~sdd~e~LtKAF 29 (163) T 1n00_A 8 TLTVPTTVPSVSEDCEQLRKAF 29 (163) T ss_dssp CCCCCSSCCCHHHHHHHHHHHT T ss_pred CCCCCCCCCCHHHHHHHHHHHH T ss_conf 8689999999799999999983 No 5 >>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A (A:270-325) Probab=7.44 E-value=27 Score=16.58 Aligned_cols=41 Identities=32% Similarity=0.293 Sum_probs=29.0 Q ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH Q ss_conf 53205877763124443212120010188875345420200 Q gi|254780844|r 30 FEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGATVHSEGK 70 (113) Q Consensus 30 fekykapsypttvalnvlsplaplgdgceqlvgatvhsegk 70 (113) |.||.++.---..--|+|--+-|+|.|--|.---+|.+.|+ T Consensus 1 ~rk~es~G~ylsL~~n~L~v~LPf~NG~F~~gtL~v~~sg~ 41 (56) T 3f7f_A 1 FRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVDSSGI 41 (56) T ss_dssp CCCCCSCCCCEEESSSEEEEEETTTTCEEEEEEEEC----- T ss_pred EEECCCHHHHHHHCCEEEEEECCCCCCCEEEEEECCCCCCC T ss_conf 22047778777530306999755678748999963477663 No 6 >>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:1-70) Probab=6.83 E-value=85 Score=13.76 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.2 Q ss_pred CCHHHCCCCCCCCCCH Q ss_conf 2001003488655512 Q gi|254780844|r 68 EGKKRSHDVPSSSNQE 83 (113) Q Consensus 68 egkkrshdvpsssnqe 83 (113) .|+|+++-.|++.|.+ T Consensus 52 tgkk~e~~~p~s~~v~ 67 (70) T 1iz6_A 52 DGKVRSIVKPTSAEVD 67 (70) T ss_dssp TCCEEEEEEETTSEEE T ss_pred CCCEEEEEEECCCCCC T ss_conf 7968999982788421 No 7 >>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:1-74) Probab=6.44 E-value=92 Score=13.57 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=13.2 Q ss_pred CCHHHCCCCCCCCCCH Q ss_conf 2001003488655512 Q gi|254780844|r 68 EGKKRSHDVPSSSNQE 83 (113) Q Consensus 68 egkkrshdvpsssnqe 83 (113) .|+|+++-.|++.|.+ T Consensus 56 tgkk~e~~~p~s~~v~ 71 (74) T 2eif_A 56 EKVKKEFVAPTSSKVE 71 (74) T ss_dssp SCCEEEEEEETTSEEE T ss_pred CCCEEEEEECCCCCCC T ss_conf 4738988853776300 No 8 >>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:1-70) Probab=6.42 E-value=92 Score=13.57 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.3 Q ss_pred CCHHHCCCCCCCCCCH Q ss_conf 2001003488655512 Q gi|254780844|r 68 EGKKRSHDVPSSSNQE 83 (113) Q Consensus 68 egkkrshdvpsssnqe 83 (113) .|+|+++-.|++.|.+ T Consensus 52 tgkk~e~~~p~s~~~~ 67 (70) T 3cpf_A 52 TGKKYEDICPSTHNMD 67 (70) T ss_dssp TCCEEEEEEETTSEEE T ss_pred CCCEEEEEECCCCEEE T ss_conf 5730688835897998 No 9 >>2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B* (B:) Probab=6.09 E-value=1.6e+02 Score=12.14 Aligned_cols=12 Identities=50% Similarity=0.531 Sum_probs=9.0 Q ss_pred CCCCHHHCCCCC Q ss_conf 555122127997 Q gi|254780844|r 79 SSNQEDQRGSPS 90 (113) Q Consensus 79 ssnqedqrgsps 90 (113) |+.-.||||.-+ T Consensus 14 s~r~dDQRGlL~ 25 (36) T 2om2_B 14 SSGAHDQRGLLR 25 (36) T ss_dssp TCSCCSCSSSCC T ss_pred HCCCCCCCCCCC T ss_conf 165321014341 No 10 >>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} (P:) Probab=5.87 E-value=1.4e+02 Score=12.48 Aligned_cols=6 Identities=100% Similarity=1.387 Sum_probs=0.0 Q ss_pred HHHCCC Q ss_conf 432121 Q gi|254780844|r 45 NVLSPL 50 (113) Q Consensus 45 nvlspl 50 (113) |||||| T Consensus 14 nvlspl 19 (26) T 3dac_P 14 NVLSPL 19 (26) T ss_pred CCCCCC T ss_conf 756778 Done!