Query gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 113
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 21:43:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780844.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imu_A Structural polyprotein 10.7 61 0.0026 13.7 0.7 12 53-64 32-43 (46)
2 1ej5_A WAsp, wiskott-aldrich s 7.9 1.1E+02 0.0047 12.2 1.3 31 56-87 77-107 (107)
3 2om2_B Regulator of G-protein 6.4 1.1E+02 0.0045 12.3 0.4 12 79-90 14-25 (36)
4 1khi_A HEX1; membrane sealing, 6.3 78 0.0033 13.1 -0.4 22 62-83 76-97 (176)
5 2bpa_3 Protein (subunit of bac 5.8 1.2E+02 0.005 12.1 0.4 13 67-79 1-13 (37)
6 1v4v_A UDP-N-acetylglucosamine 4.6 1.7E+02 0.0073 11.2 0.8 29 51-79 96-133 (376)
7 1y32_A Humanin; solution struc 4.5 1.8E+02 0.0075 11.1 1.8 13 17-29 6-18 (26)
8 2ux6_A Pseudoazurin; type-1 co 4.4 1.8E+02 0.0076 11.0 1.3 24 78-101 93-116 (122)
9 1tzp_A Penicillin-insensitive 4.3 1.7E+02 0.0072 11.2 0.3 12 49-60 208-220 (255)
10 1jsu_C P27, KIP1, CIP2; comple 4.3 54 0.0023 14.0 -2.2 7 4-10 4-10 (84)
No 1
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=10.74 E-value=61 Score=13.69 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 010188875345
Q gi|254780844|r 53 LGDGCEQLVGAT 64 (113)
Q Consensus 53 lgdgceqlvgat 64 (113)
.|+|..|+.|..
T Consensus 32 igeg~d~~igde 43 (46)
T 2imu_A 32 IGEGVDYLLGDE 43 (46)
T ss_dssp HHTHHHHHHCTT
T ss_pred CCHHHHHHHCCC
T ss_conf 102178874203
No 2
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=7.94 E-value=1.1e+02 Score=12.24 Aligned_cols=31 Identities=48% Similarity=0.603 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCHHHCCCCCCCCCCHHHCC
Q ss_conf 18887534542020010034886555122127
Q gi|254780844|r 56 GCEQLVGATVHSEGKKRSHDVPSSSNQEDQRG 87 (113)
Q Consensus 56 gceqlvgatvhsegkkrshdvpsssnqedqrg 87 (113)
-|+-.++++.|--. +|+...-||..-|||.|
T Consensus 77 ~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~ 107 (107)
T 1ej5_A 77 SSEGLVGALMHVMQ-KRSRAIHSSDEGEDQAG 107 (107)
T ss_dssp TTTTHHHHHHHHGG-GGSSCCCCCCSSCCSCC
T ss_pred CCCCCCCHHHHHHH-HHCCCCCCCCCCCCCCC
T ss_conf 98652112679987-53344435665553469
No 3
>2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B*
Probab=6.43 E-value=1.1e+02 Score=12.31 Aligned_cols=12 Identities=50% Similarity=0.531 Sum_probs=9.0
Q ss_pred CCCCHHHCCCCC
Q ss_conf 555122127997
Q gi|254780844|r 79 SSNQEDQRGSPS 90 (113)
Q Consensus 79 ssnqedqrgsps 90 (113)
|+.-.||||.-+
T Consensus 14 s~r~dDQRGlL~ 25 (36)
T 2om2_B 14 SSGAHDQRGLLR 25 (36)
T ss_dssp TCSCCSCSSSCC
T ss_pred HCCCCCCCCCCC
T ss_conf 165321014341
No 4
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=6.26 E-value=78 Score=13.10 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=15.9
Q ss_pred HHHHHCCCHHHCCCCCCCCCCH
Q ss_conf 3454202001003488655512
Q gi|254780844|r 62 GATVHSEGKKRSHDVPSSSNQE 83 (113)
Q Consensus 62 gatvhsegkkrshdvpsssnqe 83 (113)
+--...+++|++|..|++.|.+
T Consensus 76 t~~~~e~~~k~~~~~Ps~~~~~ 97 (176)
T 1khi_A 76 TKQLHEESSFVSNPAPSVVVQT 97 (176)
T ss_dssp TCCEEEEECCEECSSTTCCEEE
T ss_pred EEEEEECCCCCCCCCCCCCEEE
T ss_conf 6116743664347579973026
No 5
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=5.78 E-value=1.2e+02 Score=12.05 Aligned_cols=13 Identities=54% Similarity=0.703 Sum_probs=9.5
Q ss_pred CCCHHHCCCCCCC
Q ss_conf 0200100348865
Q gi|254780844|r 67 SEGKKRSHDVPSS 79 (113)
Q Consensus 67 segkkrshdvpss 79 (113)
|.|||||-.-|..
T Consensus 1 skgkkrsgarpgr 13 (37)
T 2bpa_3 1 SKGKKRSGARPGR 13 (37)
T ss_dssp -CCCCCCCCCCSC
T ss_pred CCCCCCCCCCCCC
T ss_conf 9754247788898
No 6
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=4.65 E-value=1.7e+02 Score=11.16 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHH---------HHHCCCHHHCCCCCCC
Q ss_conf 2001018887534---------5420200100348865
Q gi|254780844|r 51 APLGDGCEQLVGA---------TVHSEGKKRSHDVPSS 79 (113)
Q Consensus 51 aplgdgceqlvga---------tvhsegkkrshdvpss 79 (113)
--+||..|.|.+| .+|-||--||.++...
T Consensus 96 lv~GDr~~~la~a~aa~~~~ipi~HiegG~rsg~~~~~ 133 (376)
T 1v4v_A 96 LVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEP 133 (376)
T ss_dssp EEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSS
T ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 99689707999999998629747986617666666766
No 7
>1y32_A Humanin; solution structure, alzheimer'S disease, neuroprotection, unknown function; NMR {Synthetic} PDB: 2gd3_A
Probab=4.46 E-value=1.8e+02 Score=11.08 Aligned_cols=13 Identities=46% Similarity=0.720 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999986765
Q gi|254780844|r 17 IQCLVLFCSEIFA 29 (113)
Q Consensus 17 iqclvlfcseifa 29 (113)
..||.|..|||--
T Consensus 6 fsclllltseidl 18 (26)
T 1y32_A 6 FSCLLLLTSEIDL 18 (26)
T ss_dssp HHHHHHHHHHTTS
T ss_pred CEEEEEEECCCCC
T ss_conf 0687756111466
No 8
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=4.40 E-value=1.8e+02 Score=11.05 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=18.1
Q ss_pred CCCCCHHHCCCCCCHHHHHHHHHC
Q ss_conf 655512212799742220046541
Q gi|254780844|r 78 SSSNQEDQRGSPSPKKTKNILELF 101 (113)
Q Consensus 78 sssnqedqrgspspkktknilelf 101 (113)
+.+|+|+.+....|.+.|..++-+
T Consensus 93 ~~~n~~~~~~~~~~~~s~~~~~~~ 116 (122)
T 2ux6_A 93 APANLEAVKGAKNPKKAQERLDAA 116 (122)
T ss_dssp SCTTHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 998989986454737789999999
No 9
>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme, metallopeptidase, peptidoglycan hydrolase; 1.40A {Escherichia coli} SCOP: d.65.1.3 PDB: 1u10_A
Probab=4.33 E-value=1.7e+02 Score=11.19 Aligned_cols=12 Identities=67% Similarity=1.456 Sum_probs=0.0
Q ss_pred CCCCHHHHH-HHH
Q ss_conf 212001018-887
Q gi|254780844|r 49 PLAPLGDGC-EQL 60 (113)
Q Consensus 49 plaplgdgc-eql 60 (113)
+..|-|||| +.|
T Consensus 208 ~~~p~gdGC~~~l 220 (255)
T 1tzp_A 208 PLPPSGDGCGAEL 220 (255)
T ss_dssp CCCCSSCCTTHHH
T ss_pred CCCCCCCCCHHHH
T ss_conf 9977789726899
No 10
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=4.31 E-value=54 Score=14.01 Aligned_cols=7 Identities=86% Similarity=1.317 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 7888889
Q gi|254780844|r 4 RSACRNL 10 (113)
Q Consensus 4 rsacrnl 10 (113)
.||||||
T Consensus 4 ~sacR~L 10 (84)
T 1jsu_C 4 PSACRNL 10 (84)
T ss_dssp CTTCCCS
T ss_pred CCHHHHC
T ss_conf 6545545
Done!