BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780844|ref|YP_003065257.1| hypothetical protein
CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
(113 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040521|gb|ACT57317.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 113
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MFLRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQL 60
MFLRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQL
Sbjct: 1 MFLRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQL 60
Query: 61 VGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQYYSF 113
VGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQYYSF
Sbjct: 61 VGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQYYSF 113
>gi|315122731|ref|YP_004063220.1| hypothetical protein CKC_04915 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496133|gb|ADR52732.1| hypothetical protein CKC_04915 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 105
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 3 LRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVG 62
+R + ++ C+L +Q FCS A + ++ S T+ PL Q
Sbjct: 1 MRFVHKKMIFCVLILQYWAAFCSYSIALQTHEIASESATIGEENF----PLERADGQKEK 56
Query: 63 ATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQYY 111
+ S+ + ++ SN++D + PK T++IL+ FPLP PP +YY
Sbjct: 57 PSYQSKKDVINKNILVLSNKKDLK---KPKNTESILDTFPLPPPPAKYY 102
>gi|77165579|ref|YP_344104.1| hypothetical protein Noc_2114 [Nitrosococcus oceani ATCC 19707]
gi|254434205|ref|ZP_05047713.1| conserved hypothetical protein [Nitrosococcus oceani AFC27]
gi|76883893|gb|ABA58574.1| Protein of unknown function DUF1631 [Nitrosococcus oceani ATCC
19707]
gi|207090538|gb|EDZ67809.1| conserved hypothetical protein [Nitrosococcus oceani AFC27]
Length = 787
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 66 HSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPL 105
+S ++ +HD+P SS + + G PSP+K K + EL +PL
Sbjct: 665 NSRSREETHDIPLSSPIKQKSGPPSPEKDKYLQELAAVPL 704
>gi|308497664|ref|XP_003111019.1| hypothetical protein CRE_04544 [Caenorhabditis remanei]
gi|308242899|gb|EFO86851.1| hypothetical protein CRE_04544 [Caenorhabditis remanei]
Length = 587
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 42 VALNVLSPLAPLGDGCEQL-----VGATVHSEGKKRSHD----VPSSSNQEDQRGSPSPK 92
+A +VL P P+G+ L V + G+ SH + +S++Q +R SPSP+
Sbjct: 186 LAEDVLEPEQPIGNTSPSLKYDYVVIQPQVNHGRTSSHQTHQPIQNSASQYSRRKSPSPR 245
Query: 93 KTKNILELFPL 103
+T+ I+ +PL
Sbjct: 246 ETEAIVRTYPL 256
>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
Length = 377
Score = 34.6 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 38 YPTTVALNVLSPLAPLGDGCEQLVGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNI 97
YP T A +++ L G E + V + +++ P+S+ + QR P+PK+
Sbjct: 207 YPLTFAKDLIDELTNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTA 266
Query: 98 LELFPLPLPPTQYYSF 113
P+ + P ++ SF
Sbjct: 267 KVSEPVQVAPAEFQSF 282
>gi|320588768|gb|EFX01236.1| transporter protein smf2 [Grosmannia clavigera kw1407]
Length = 651
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 3 LRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGC 57
L ACR L C L++ VL +EI A T +ALN+L P PL GC
Sbjct: 223 LAEACRAFLPCWLNVTLYVL--AEIAIIATDIAEVIGTAIALNLLQPKIPLVAGC 275
>gi|296227920|ref|XP_002759573.1| PREDICTED: 5'-3' exoribonuclease 1 isoform 2 [Callithrix jacchus]
Length = 1706
Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 SEGKKRSHDVPSSSNQEDQRGSPS-PKKTKNILELFPLPLPPTQYYS 112
+E K+ H++P SSN+ D+ G PS PK+ K + P +Y++
Sbjct: 1375 NEMKQIGHEIPVSSNRRDEYGLPSQPKQNKKLASYVNKPHSANEYHN 1421
>gi|296227918|ref|XP_002759572.1| PREDICTED: 5'-3' exoribonuclease 1 isoform 1 [Callithrix jacchus]
Length = 1694
Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 SEGKKRSHDVPSSSNQEDQRGSPS-PKKTKNILELFPLPLPPTQYYS 112
+E K+ H++P SSN+ D+ G PS PK+ K + P +Y++
Sbjct: 1376 NEMKQIGHEIPVSSNRRDEYGLPSQPKQNKKLASYVNKPHSANEYHN 1422
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,145,938,904
Number of Sequences: 14124377
Number of extensions: 46679618
Number of successful extensions: 118116
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 118108
Number of HSP's gapped (non-prelim): 12
length of query: 113
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 32
effective length of database: 3,698,719,093
effective search space: 118359010976
effective search space used: 118359010976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)