RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780844|ref|YP_003065257.1| hypothetical protein
CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum
          aerophilum} (A:1-71)
          Length = 71

 Score = 24.7 bits (54), Expect = 4.9
 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 59 QLVGATVHSEGKKRSHDVPSSSNQE 83
          ++V   V   G KR+  +P  +  E
Sbjct: 46 RIVAVGVFD-GGKRTLSLPVDAQVE 69


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 791,556
Number of extensions: 28742
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 4,956,049
Length adjustment: 67
Effective length of query: 46
Effective length of database: 2,691,114
Effective search space: 123791244
Effective search space used: 123791244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)