RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62] (113 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.9 bits (93), Expect = 1e-04 Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 61/111 (54%) Query: 35 AP-SYPT---------TVALNVL--SPLAPLGDGCEQLVGATVHSEG------------- 69 P S P V +L +P G+ L GAT HS+G Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTP----GELRSYLKGATGHSQGLVTAVAIAETDSW 289 Query: 70 -------KK----------RSHDV-PSSS-----------NQEDQRGSPSP 91 +K R ++ P++S N E G PSP Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE---GVPSP 337 >1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A Length = 107 Score = 26.3 bits (58), Expect = 2.0 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 54 GDGCEQLVGATVHSEGKKRSHDVPSSSNQEDQRG 87 E LVGA +H +KRS + SS EDQ G Sbjct: 75 SQSSEGLVGALMHVM-QKRSRAIHSSDEGEDQAG 107 >1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Length = 176 Score = 24.4 bits (53), Expect = 5.6 Identities = 6/19 (31%), Positives = 8/19 (42%) Query: 65 VHSEGKKRSHDVPSSSNQE 83 +H E S+ PS Q Sbjct: 79 LHEESSFVSNPAPSVVVQT 97 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 899,391 Number of extensions: 33853 Number of successful extensions: 38 Number of sequences better than 10.0: 1 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 7 Length of query: 113 Length of database: 5,693,230 Length adjustment: 76 Effective length of query: 37 Effective length of database: 3,850,686 Effective search space: 142475382 Effective search space used: 142475382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.6 bits)