RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780844|ref|YP_003065257.1| hypothetical protein
CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 61/111 (54%)

Query: 35  AP-SYPT---------TVALNVL--SPLAPLGDGCEQLVGATVHSEG------------- 69
            P S P           V   +L  +P    G+    L GAT HS+G             
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTP----GELRSYLKGATGHSQGLVTAVAIAETDSW 289

Query: 70  -------KK----------RSHDV-PSSS-----------NQEDQRGSPSP 91
                  +K          R ++  P++S           N E   G PSP
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE---GVPSP 337


>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin
           turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1
           PDB: 1t84_A* 2k42_A
          Length = 107

 Score = 26.3 bits (58), Expect = 2.0
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 54  GDGCEQLVGATVHSEGKKRSHDVPSSSNQEDQRG 87
               E LVGA +H   +KRS  + SS   EDQ G
Sbjct: 75  SQSSEGLVGALMHVM-QKRSRAIHSSDEGEDQAG 107


>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein;
          1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
          Length = 176

 Score = 24.4 bits (53), Expect = 5.6
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 65 VHSEGKKRSHDVPSSSNQE 83
          +H E    S+  PS   Q 
Sbjct: 79 LHEESSFVSNPAPSVVVQT 97


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 899,391
Number of extensions: 33853
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 7
Length of query: 113
Length of database: 5,693,230
Length adjustment: 76
Effective length of query: 37
Effective length of database: 3,850,686
Effective search space: 142475382
Effective search space used: 142475382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)