RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780844|ref|YP_003065257.1| hypothetical protein
CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 27.0 bits (60), Expect = 0.48
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 54  GDGCEQLVGATVHSEGKKRSHDVPSSSNQEDQRG 87
               E LVGA +H   +KRS  + SS   EDQ G
Sbjct: 75  SQSSEGLVGALMHVM-QKRSRAIHSSDEGEDQAG 107


>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 144

 Score = 23.7 bits (51), Expect = 5.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 12  VCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLG 54
              LS   + +  S + A E+++  SY + +A  V+  L   G
Sbjct: 88  CAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLGIQG 130


>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite
           (Plasmodium falciparum) [TaxId: 5833]}
          Length = 179

 Score = 23.5 bits (50), Expect = 5.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 75  DVPSSSNQEDQRGSPSPKKTKNILELF 101
           DV + +N  D  GSP+   + +  ELF
Sbjct: 14  DVRNMNNISDTDGSPNDFTSIDTHELF 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,528
Number of extensions: 14797
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 4
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)