HHsearch alignment for GI: 254780845 and conserved domain: cd01047

>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=95.23  E-value=0.069  Score=32.10  Aligned_cols=209  Identities=17%  Similarity=0.203  Sum_probs=109.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             899899999999999998643333455666401330--577999999999999997789999999971464699999997
Q gi|254780845|r   73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR  150 (352)
Q Consensus        73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~  150 (352)
T Consensus        55 ~~~~~~r~~f~dfL~~SctsE-FSG~lLykEl~rr~k~~nP~l~e~f~~MaRDEaRHAGFlN~al~d~~~~lD-------  126 (323)
T cd01047          55 KIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLALD-------  126 (323)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------
T ss_conf             089889999999999876776-012368999998742379079999999865477777678899998495202-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHC--CCCCHHHHHHHHH
Q ss_conf             20018987788999997401210102677740149999999974000144411478899-89975--9801289999999
Q gi|254780845|r  151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRA--NKMVGIAEQYQYI  227 (352)
Q Consensus       151 ~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~-~l~~~--g~m~g~~~~i~~I  227 (352)
T Consensus       127 -LgfLtk~k~Y-----T-----------~F~pkfI~Ya----tYLSEKIG-Y~RYItIyRhLe~~Pe~rf~PiF~~Fe~W  184 (323)
T cd01047         127 -LGFLTKTRKY-----T-----------FFKPKFIFYA----TYLSEKIG-YWRYITIYRHLERNPENQFHPIFKYFENW  184 (323)
T ss_pred             -HHHHCCCCCE-----E-----------EECCCEEEEH----HHHHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             -4765166732-----6-----------6576045403----46665431-67887999999869110236079989988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHH
Q ss_conf             85666669999999997655375422067-89999999999998768868875188---847999899999999999999
Q gi|254780845|r  228 MRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRR  303 (352)
Q Consensus       228 ~RDE~lH~~f~~~l~~~l~~E~p~l~~~~-~~~~i~~~~~eave~E~~~~~~~~~~---~~~Gl~~~~~~~yi~y~an~r  303 (352)
T Consensus       185 CqDE~RHGd~F~~lmr----a~P~ll~~~~~~lw~RFFllaVf-a-Tmyl~d~~R~~Fy~alGlD~~~yD~~Vir~TNe~  258 (323)
T cd01047         185 CQDENRHGDFFAALLR----AQPHLLNDGKNKLWIRFFLLSVY-A-TMYLNDHQRPDFYEALGLDTTEFDMHVIRETNET  258 (323)
T ss_pred             HCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHH-H-HEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             5341241799999996----48655522368999999999998-7-2154104617789986999799729999996187


Q ss_pred             HHHCCCCCCCCCCCCC
Q ss_conf             9978879889998883
Q gi|254780845|r  304 CHQIGLEPLFKYTENP  319 (352)
Q Consensus       304 L~~lG~~~~f~~~~nP  319 (352)
T Consensus       259 s~rv-FPvvLDv-d~P  272 (323)
T cd01047         259 AARV-FPAVLDV-DNP  272 (323)
T ss_pred             HHHH-CCEEEEC-CCH
T ss_conf             7864-8854417-886