HHsearch results for GI: 254780845 and protein with PDBid: 1jk0_A
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=0 Score=593.18 Aligned_cols=308 Identities=31% Similarity=0.575 Sum_probs=284.6
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13374868899800017861679999999999457987036747989985202689989999999999999864333345
Q gi|254780845|r 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 (352)
Q Consensus 19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~ 98 (352)
..+++|+.++++|++++||||||+|++|+|++++||+|+||||++|++||++ +||++||++++++|++|+++|++|++
T Consensus 93 ~~~e~ll~en~~r~vlfPikY~~~~~lYkk~~a~FW~peEIdls~D~~Dw~~--~Lt~~Er~~i~~iLaffa~~DsiV~~ 170 (419)
T 1jk0_A 93 EKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNE 170 (419)
T ss_dssp GGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHH--TCCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred HCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2178665789886367074677999999999976999422173002999865--59999999999999999999999970
Q ss_pred HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 5666401330577999999999999997789999999971464699---9999972001898778899999740121010
Q gi|254780845|r 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175 (352)
Q Consensus 99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~ 175 (352)
++...+++.++.||+++++++|++||+||+++||+|++++++|+++ +|+++.+.|.+++|++|+.++++.
T Consensus 171 nl~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~iietl~~d~~e~~~lf~~~~~~~~l~~Ka~~~~~~~~~------- 243 (419)
T 1jk0_A 171 NLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD------- 243 (419)
T ss_dssp HHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------
T ss_conf 2899999867799999999999999999999999999855588888999999998777999888999987556-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 26777401499999999740001444114788998997598012899999998566666999999999765537542206
Q gi|254780845|r 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 (352)
Q Consensus 176 ~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~ 255 (352)
.+..+.++++ +.+++|||+||+||+++++|+++|+|+|++++|++|+|||++|+.|++.|++.++.+.|
T Consensus 244 -----~~~~~~~~lv-a~~~lEGI~F~ssFa~i~~l~~~g~M~Gl~~~i~~I~RDE~lH~~f~~~L~~~l~~e~~----- 312 (419)
T 1jk0_A 244 -----ADALFGERLV-AFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD----- 312 (419)
T ss_dssp -----SSCCHHHHHH-HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-----
T ss_pred -----HHHHHHHHHH-HHHHCCCEEHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_conf -----7899999989-87723401000018999999965851526998899998999999999999999873210-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 78999999999999876886887518884799989999999999999999788798899988832578997178867555
Q gi|254780845|r 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 (352)
Q Consensus 256 ~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~tnF 335 (352)
.+++.+++.+||++|.+|+.++++.+++||+++++++||+|+||+||.+||++++|++ +||+|||+. ++..++|||
T Consensus 313 --~~~v~~~i~eavelE~e~~~~~l~~~l~Gln~~~m~~YIky~Anr~L~~LG~~~~f~~-~NP~~wme~-i~~~~ktnF 388 (419)
T 1jk0_A 313 --PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-ENPFDFMEN-ISLAGKTNF 388 (419)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCC-CCCCGGGGC----------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHH-HCCCCCCCC
T ss_conf --7899999999999999999873278757999999999999999999997699987899-998368887-345787777
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 766711221058677
Q gi|254780845|r 336 FETRVTEYQQGAELK 350 (352)
Q Consensus 336 Fe~~~t~Y~k~~~~~ 350 (352)
||+|||+|+|||.+.
T Consensus 389 FE~rvt~Y~k~~v~~ 403 (419)
T 1jk0_A 389 FEKRVSDYQKAGVMS 403 (419)
T ss_dssp ---------------
T ss_pred CCCCHHHHHHCCCCC
T ss_conf 667688887623666