Query gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 352
No_of_seqs 132 out of 1350
Neff 7.5
Searched_HMMs 23785
Date Tue May 31 22:07:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780845.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1syy_A Ribonucleoside-diphosph 100.0 0 0 656.1 34.4 344 6-351 2-346 (346)
2 2rcc_A Ribonucleoside-diphosph 100.0 0 0 599.3 35.1 337 1-352 2-344 (346)
3 1h0o_A Ribonucleoside-diphosph 100.0 0 0 595.8 30.7 311 15-350 64-377 (390)
4 1mxr_A Ribonucleotide reductas 100.0 0 0 589.4 31.9 335 10-349 4-362 (375)
5 1jk0_A RNR Y2, ribonucleoside- 100.0 0 0 593.2 28.9 308 19-350 93-403 (419)
6 2p1i_A Ribonucleotide reductas 100.0 0 0 585.7 24.4 318 6-349 15-335 (349)
7 1jk0_B RNR Y4, ribonucleoside- 100.0 0 0 568.0 17.8 307 19-350 22-330 (345)
8 3n37_A Ribonucleoside-diphosph 100.0 0 0 537.7 32.4 297 33-350 10-311 (319)
9 2o1z_A Ribonucleotide reductas 100.0 0 0 538.3 28.5 292 8-324 16-310 (311)
10 3dhz_A Ribonucleotide reductas 100.0 0 0 531.1 31.4 296 33-349 20-320 (329)
11 3mjo_A Ribonucleotide reductas 100.0 0 0 477.1 32.0 274 34-328 20-296 (296)
12 3ee4_A Probable ribonucleoside 100.0 0 0 411.6 22.2 293 24-340 18-315 (323)
13 2inc_A Toluene, O-xylene monoo 99.2 1.1E-08 4.4E-13 77.4 21.7 222 72-312 82-313 (491)
14 3ge3_A Toluene-4-monooxygenase 98.9 7.6E-07 3.2E-11 64.6 18.9 219 74-313 85-315 (500)
15 1mty_D Methane monooxygenase h 98.6 2.7E-05 1.1E-09 54.0 19.6 221 73-312 80-315 (512)
16 2inp_A Phenol hydroxylase comp 98.3 0.00025 1E-08 47.4 21.1 222 73-312 82-313 (494)
17 2inp_C Phenol hydroxylase comp 98.1 0.00063 2.6E-08 44.6 21.8 214 72-312 106-326 (328)
18 2oc5_A Hypothetical protein; N 97.9 0.0014 5.7E-08 42.3 21.9 202 74-310 27-230 (244)
19 3ge3_B Toluene-4-monooxygenase 97.8 0.0025 1.1E-07 40.4 18.7 186 73-278 109-303 (327)
20 2uw1_A Desaturase, plastid del 97.8 0.0024 1E-07 40.6 14.9 190 40-252 20-225 (338)
21 1za0_A Possible acyl-[acyl-car 97.7 0.0028 1.2E-07 40.2 15.0 177 40-250 16-208 (275)
22 1mhy_B Methane monooxygenase h 97.6 0.0039 1.6E-07 39.2 22.5 221 73-310 138-379 (395)
23 1mty_B Methane monooxygenase h 97.6 0.0039 1.6E-07 39.2 19.0 214 73-303 130-358 (384)
24 2inc_B Toluene, O-xylene monoo 97.1 0.017 7E-07 34.9 22.1 209 73-308 105-322 (322)
25 3ez0_A Uncharacterized protein 96.5 0.045 1.9E-06 31.9 20.2 204 77-310 11-224 (225)
26 3chh_A P-aminobenzoate N-oxyge 95.3 0.15 6.2E-06 28.3 16.6 207 53-290 60-284 (336)
27 2fzf_A Hypothetical protein; s 92.4 0.2 8.5E-06 27.4 5.2 141 82-247 21-163 (175)
28 1vjx_A Putative ferritin-like 91.9 0.49 2.1E-05 24.8 6.7 140 82-243 15-154 (157)
29 3oql_A TENA homolog; transcrip 87.9 1.2 5.1E-05 22.1 15.6 217 35-282 14-247 (262)
30 1rcw_A CT610, CADD; iron, DI-i 85.9 1.6 6.5E-05 21.3 18.5 156 103-283 60-222 (231)
31 1o9i_A Pseudocatalase; oxidore 80.2 2.6 0.00011 19.8 5.5 145 94-247 37-194 (266)
32 2v8t_A Manganese-containing ps 79.3 2.7 0.00011 19.6 5.5 130 111-247 57-201 (302)
33 3dde_A TENA/THI-4 protein, dom 70.8 4.4 0.00019 18.2 19.8 193 58-282 24-220 (239)
34 3hl1_A Ferritin like protein; 63.8 6.1 0.00025 17.3 5.6 47 83-140 24-70 (317)
35 1nnq_A Rubrerythrin; structura 63.1 6.2 0.00026 17.2 13.0 114 90-248 16-131 (171)
36 1yuz_A Nigerythrin; rubrythrin 58.1 7.5 0.00032 16.6 13.2 114 103-247 52-165 (202)
37 1zpy_A Hypothetical protein NE 57.1 7.8 0.00033 16.5 9.0 62 74-138 13-74 (95)
38 2oh3_A Rubrerythrin, COG1633: 56.2 8.1 0.00034 16.4 10.7 120 106-249 32-153 (167)
39 1otk_A Protein PAAC, phenylace 50.2 10 0.00042 15.8 20.9 183 94-310 17-210 (249)
40 2hz8_A De novo designed DIIRON 47.5 11 0.00046 15.5 3.3 25 212-236 85-109 (115)
41 3e6s_A Ferritin; iron storage, 41.7 13 0.00056 14.9 9.1 27 217-243 35-61 (168)
42 1vlg_A Ferritin; TM1128, struc 40.7 14 0.00058 14.8 7.6 16 110-125 17-32 (176)
43 2qqy_A Sigma B operon; dodecam 38.1 15 0.00064 14.5 13.7 138 73-244 3-143 (149)
44 2dc3_A Cytoglobin; myoglobin, 35.7 17 0.0007 14.3 3.1 33 59-91 7-39 (193)
45 3bvf_A Ferritin; iron storage, 35.5 17 0.0007 14.3 7.6 42 206-247 116-157 (181)
46 1udd_A Transcriptional regulat 35.3 17 0.0007 14.2 17.6 190 60-284 24-216 (226)
47 3bjd_A Putative 3-oxoacyl-(acy 32.2 19 0.00079 13.9 14.0 155 102-281 161-324 (332)
48 3hlx_A Pyrroloquinoline-quinon 31.4 19 0.00081 13.8 19.8 186 67-280 32-226 (258)
49 2fkz_A Bacterioferritin; ferro 30.5 20 0.00084 13.7 15.9 109 108-247 35-143 (155)
50 2e0z_A Virus-like particle; ba 29.1 9.5 0.0004 15.9 0.0 67 74-144 15-81 (345)
51 2o4d_A Hypothetical protein PA 28.6 21 0.0009 13.5 6.1 17 73-89 49-65 (165)
52 1z72_A Transcriptional regulat 28.1 22 0.00092 13.4 17.5 186 57-280 32-223 (225)
53 1z6o_A Ferritin light chain; m 26.4 23 0.00099 13.2 3.8 20 217-236 69-88 (212)
54 1j30_A 144AA long hypothetical 25.2 25 0.001 13.1 14.3 107 106-246 35-141 (144)
55 3ibx_A TENA, HP1287, putative 20.4 30 0.0013 12.5 15.4 191 58-280 24-219 (221)
No 1
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A
Probab=100.00 E-value=0 Score=656.12 Aligned_cols=344 Identities=56% Similarity=1.017 Sum_probs=331.5
Q ss_pred CCCHHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 641000654578813374868899-8000178616799999999994579870367479899852026899899999999
Q gi|254780845|r 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~ 84 (352)
+.+++++|+++++.++|||++|++ |+++++|+||||+|++|++++++||+|+|||+++|++||++ ++||++||+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~PikYp~~~~~ykk~~~~fW~peEi~ls~D~~dw~~-~kL~~~er~~~~~ 80 (346)
T 1syy_A 2 QADILDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILL 80 (346)
T ss_dssp CCSSGGGGGGSCCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHH
T ss_pred CCCHHCCCCCCCCCCCCEEECCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH-CCCCHHHHHHHHH
T ss_conf 741310545456711040258998765550898777999999999976998311075123988865-8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999864333345566640133057799999999999999778999999997146469999999720018987788999
Q gi|254780845|r 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 (352)
Q Consensus 85 ~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~ 164 (352)
+|++|+.+|++|+.+++..+++.++.||+++++++|+++|+||++||++++++++++++++|+++.++|.+++|++++.+
T Consensus 81 ~l~~~~~~D~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~E~iHs~sYs~i~~~l~~d~~e~~~~~~~~~~i~~k~~~~~~ 160 (346)
T 1syy_A 81 NLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQME 160 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999989889983079989988380999999999999999999999999998568889999998405999999999998
Q ss_pred HHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99740121010267774014999999997400014441147889989975980128999999985666669999999997
Q gi|254780845|r 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 (352)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~ 244 (352)
+++............+..+.++++++++++++||++|||||+++++|+++|+|+|++++|++|+|||++|+.|++.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~ 240 (346)
T 1syy_A 161 ITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLING 240 (346)
T ss_dssp TTSGGGSTTCCSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 66410033311023100899999999999999999999999999999877998544998778614578899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 65537542206789999999999998768868875188847999899999999999999997887988999888325789
Q gi|254780845|r 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 (352)
Q Consensus 245 l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~ 324 (352)
+++|+|+++++++.+++++++++||++|++|++++|+.|++||+++++++||+|+||+||.+||++|+|++ +||+|||+
T Consensus 241 l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~~~Gl~~~~~~~Yv~y~an~rL~~lG~~~~f~~-~nP~~w~~ 319 (346)
T 1syy_A 241 IKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHT-KNPFPWMS 319 (346)
T ss_dssp HHHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSSCC-CCSCTTC-
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHH
T ss_conf 98519787568999999999999999999999985658878999999999999999999997799998999-99637899
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 971788675557667112210586778
Q gi|254780845|r 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351 (352)
Q Consensus 325 ~~~~~~~~tnFFe~~~t~Y~k~~~~~~ 351 (352)
+.++++++|||||+|||+|+|+|.++|
T Consensus 320 ~~~~~~~~~nFFe~r~~~Y~k~~~~~~ 346 (346)
T 1syy_A 320 ETIDLNKEKNFFETRVIEYQHAASLTW 346 (346)
T ss_dssp ---------------------------
T ss_pred HHHCCCCCCCCCCCCHHCCCCCCCCCC
T ss_conf 863867776878897210454577889
No 2
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=0 Score=599.35 Aligned_cols=337 Identities=26% Similarity=0.474 Sum_probs=305.2
Q ss_pred CCCCCCCCHHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 98543641000654578813374868899-80001786167999999999945798703674798998520268998999
Q gi|254780845|r 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek 79 (352)
|++.... +++++++.. .+++|++|++ +..+++|+||||+|++|++++++||+|+|||+++|++||++ ||++||
T Consensus 2 ~~~~~~~-~i~~~~~~n--~~~~i~~g~~~~~~~~~~ikY~~~~~~y~k~~~~fW~peEi~ls~D~~dw~~---Lt~~Er 75 (346)
T 2rcc_A 2 MEQLQKR-KIYDTTASN--ASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQ 75 (346)
T ss_dssp CCCCCCC-CSCCTTSCS--SCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGGG---SCHHHH
T ss_pred CCHHCCC-CCCCCCCCC--CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHH
T ss_conf 1110335-678999987--6688507997642324444768999999999877999423150410899987---999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHH
Q ss_conf 999999999986433334556664013305779999999999999977899999999714646--999999972001898
Q gi|254780845|r 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITA 157 (352)
Q Consensus 80 ~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~ 157 (352)
++++++|++|+++|++|++.+ ..+.+.++.||+++++++|+++|+||+++||++++++++++ +++|+++.++|.+++
T Consensus 76 ~~~~~iL~~f~~~D~~~~~~~-~~~~~~~~~~E~~~~~~~~~~~E~iH~~sYs~il~~l~~~~~~~e~~~~~~~~~~i~~ 154 (346)
T 2rcc_A 76 EAFKKIIGLLAFLDSVQTDYS-MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKE 154 (346)
T ss_dssp HHHHHHHHHHHHTTTTCCCHH-HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999887752458-9999865699999999999999999999999999986477017999999987799998
Q ss_pred HHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 77889999974012101026777401499999999740001444114788998997598012899999998566666999
Q gi|254780845|r 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 (352)
Q Consensus 158 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f 237 (352)
|++|+.++++.... .+.++.+++++ ++++++|||+|||||+++++|+++|+|+|++++|++|+|||++|+.|
T Consensus 155 k~~~~~~~~~~~~~-------~~~~~~~~~~l-v~~~~lEGi~f~ssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~ 226 (346)
T 2rcc_A 155 RNEFIIDGYEKFVD-------NPTPKTFLESI-VYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYL 226 (346)
T ss_dssp HHHHHHHHHHHHHH-------SCCHHHHHHHH-HHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 77899999875510-------24578999999-99999889999988999999987088987899999998437688999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-C
Q ss_conf 999999765537542206789999999999998768868875188847999899999999999999997887988999-8
Q gi|254780845|r 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-T 316 (352)
Q Consensus 238 ~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~-~ 316 (352)
++.+++++++|+|+++++++.+++++++++||++|++|++++++.+++|||++++++||+|+||+||.+||++++|+. .
T Consensus 227 ~~~l~~~l~~e~~~~~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~e~~~~yi~y~an~~L~~lG~~~~f~~~~ 306 (346)
T 2rcc_A 227 FTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIK 306 (346)
T ss_dssp HHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHTTCCCSCTTCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999998762661025678999999999999999999999818776888899999999999999999779999998777
Q ss_pred CCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 883257899717886-755576671122105867-789
Q gi|254780845|r 317 ENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAEL-KWD 352 (352)
Q Consensus 317 ~nP~~W~~~~~~~~~-~tnFFe~~~t~Y~k~~~~-~~d 352 (352)
+||+|||++..++++ ++||||+|+|+|+|++.. +||
T Consensus 307 ~nP~~w~~~~~~~~~~~~nFFE~~~t~Y~k~~~~~~~D 344 (346)
T 2rcc_A 307 HNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 344 (346)
T ss_dssp SCSCTTC-------------------------------
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 89588999864347652588889778753267778866
No 3
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=100.00 E-value=0 Score=595.77 Aligned_cols=311 Identities=30% Similarity=0.560 Sum_probs=286.5
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 57881337486889980001786167999999999945798703674798998520268998999999999999986433
Q gi|254780845|r 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 (352)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~ 94 (352)
.++...+++|++++++|++++||||||+|++|+|++++||+|+||||++|++||++ ||++||++++++|++|+++|+
T Consensus 64 ~~~~~~~e~~l~en~~r~~l~PikY~~~~~~ykk~~~~fW~peEIdls~D~~dw~~---Lt~~Er~~i~~iL~~fa~~D~ 140 (390)
T 1h0o_A 64 TNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASDG 140 (390)
T ss_dssp -CCSCTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHH---SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHH
T ss_conf 78887767454689986345788588999999999976998011070644999974---999999999999999999999
Q ss_pred HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33455666401330577999999999999997789999999971464699---999997200189877889999974012
Q gi|254780845|r 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 (352)
Q Consensus 95 ~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~ 171 (352)
+|+++++..+++.++.||+++++++|++||+||+++||+|++++++++.+ .|+++.+.|.+++|+.|+.++...
T Consensus 141 iV~~~l~~~~~~~i~~pE~~~~~~~q~~~E~IHsesYs~il~tl~~d~~e~~~~~~~~~~~~~~~~k~~~~~~~~~~--- 217 (390)
T 1h0o_A 141 IVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGD--- 217 (390)
T ss_dssp HHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHC---
T ss_pred HHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99606798887757999999999999999999999999999972254889999999998718899999999975256---
Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10102677740149999999974000144411478899899759801289999999856666699999999976553754
Q gi|254780845|r 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~ 251 (352)
.+..+.+++ ++.+++|||+||+||+++++|+++|+|+|++++|+||+|||++|+.|++.++++++.+.+
T Consensus 218 ---------~~~~~~~~l-v~~~~lEGi~F~s~Fa~~~~l~~~g~M~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~- 286 (390)
T 1h0o_A 218 ---------KEATYGERV-VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPA- 286 (390)
T ss_dssp ---------SSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-
T ss_pred ---------CCHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-
T ss_conf ---------400499988-899852321120127999999853861316888799998899999999999998740216-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 22067899999999999987688688751888479998999999999999999978879889998883257899717886
Q gi|254780845|r 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 (352)
Q Consensus 252 l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~ 331 (352)
.+++++++.+||++|.+|++++++.|++|||++++++||+|+||+||.+||++++|++ +||+|||+. +++.+
T Consensus 287 ------~~~i~e~~~eavelE~~~~~~~~~~~~~Gln~~~~~~YIky~an~~L~~LG~~~~f~~-~NP~~wme~-i~~~~ 358 (390)
T 1h0o_A 287 ------EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRV-ENPFDFMEN-ISLEG 358 (390)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHTTCCCSSCC-CCSCGGGC-------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHH-HCCCC
T ss_conf ------9999999999999999999985678758989999999999999999997799998999-996099986-22478
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 7555766711221058677
Q gi|254780845|r 332 EKNFFETRVTEYQQGAELK 350 (352)
Q Consensus 332 ~tnFFe~~~t~Y~k~~~~~ 350 (352)
+|||||+|||+|+|+|.++
T Consensus 359 ktnFFE~rvt~Y~k~g~~~ 377 (390)
T 1h0o_A 359 KTNFFEKRVGEYQRMGVMS 377 (390)
T ss_dssp -------------------
T ss_pred CCCCCCCCHHHCEECCCCC
T ss_conf 8777677723201565446
No 4
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ...
Probab=100.00 E-value=0 Score=589.38 Aligned_cols=335 Identities=21% Similarity=0.309 Sum_probs=300.4
Q ss_pred HCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 00654578813374868899-80001786167999999999945798703674798998520268998999999999999
Q gi|254780845|r 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 (352)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~ 88 (352)
+||++++... +++|+.|.+ +..++.|+||||+|++|++++++||+|+|||+++|++||++ ||++||++++++|++
T Consensus 4 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~---Lt~~Er~~~~~~l~~ 79 (375)
T 1mxr_A 4 TFSQTKNDQL-KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKY 79 (375)
T ss_dssp SSCCSCCCTT-SSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHT---SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_conf 3689997401-156305898774227764567999999999857998202361532899977---999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98643333455666401330577999999999999997789999999971464699999997200189877889999974
Q gi|254780845|r 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 (352)
Q Consensus 89 ~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~ 168 (352)
|+++|++|++++...+++.++.||+++++++|+++|+||++|||+|+++++.++++.|+++.++|.+++|+.++.++++.
T Consensus 80 ft~~D~~v~~~~~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~~~~~~~~~~~~~~~k~~~~~~~~~~ 159 (375)
T 1mxr_A 80 QTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE 159 (375)
T ss_dssp HHHHHHHHHHHHHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHCHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999756299885025888999999999999999999999999987278588999998537778889989999988
Q ss_pred HCCCHHH-----------------CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 0121010-----------------26777401499999999740001444114788998997598012899999998566
Q gi|254780845|r 169 LSSPSFT-----------------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 (352)
Q Consensus 169 ~~~~~~~-----------------~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE 231 (352)
+.+.... ....+.++.++. .+++++++||++|||||+++++|+++|+|||++++|+||+|||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~~lEgi~f~s~Fa~~~~l~~~g~m~g~~~~i~~I~RDE 238 (375)
T 1mxr_A 160 LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYL-CLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDE 238 (375)
T ss_dssp HHHHHHHHHHHCSEEEEETTEEEEECHHHHHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 877678988615665333464322220278999999-9999999999999874999999885498866799999998428
Q ss_pred HHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 6669999999997655375----42206789999999999998768868875188-847999899999999999999997
Q gi|254780845|r 232 SLHLNFGIDVINQIKIENP----HLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQ 306 (352)
Q Consensus 232 ~lH~~f~~~l~~~l~~E~p----~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~yi~y~an~rL~~ 306 (352)
++|+.||++++++++++.+ +.+++++.++|++++.+||++|++|++++++. +++|||++++++||+|+||+||.+
T Consensus 239 ~~H~~f~~~l~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eave~E~~~~~~~~~~~~~~glt~~~~~~yi~y~an~rL~~ 318 (375)
T 1mxr_A 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQA 318 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999843786245665899999999999999999999999863688858989999999999999999997
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 8879889998883257899717886-755576671122105867
Q gi|254780845|r 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAEL 349 (352)
Q Consensus 307 lG~~~~f~~~~nP~~W~~~~~~~~~-~tnFFe~~~t~Y~k~~~~ 349 (352)
||++++|++.+||+|||+..+++.+ ++||||+|||+|+||+..
T Consensus 319 LG~~~~f~~~~nP~~w~~~~~~~~~~~~nFFe~~~t~Y~~~~~~ 362 (375)
T 1mxr_A 319 VGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQID 362 (375)
T ss_dssp TTCCCCSCCCCCSCGGGGGTC-----------------------
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHEEECCCC
T ss_conf 79999999999983679998704887548766870001233445
No 5
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=0 Score=593.18 Aligned_cols=308 Identities=31% Similarity=0.575 Sum_probs=284.6
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13374868899800017861679999999999457987036747989985202689989999999999999864333345
Q gi|254780845|r 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 (352)
Q Consensus 19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~ 98 (352)
..+++|+.++++|++++||||||+|++|+|++++||+|+||||++|++||++ +||++||++++++|++|+++|++|++
T Consensus 93 ~~~e~ll~en~~r~vlfPikY~~~~~lYkk~~a~FW~peEIdls~D~~Dw~~--~Lt~~Er~~i~~iLaffa~~DsiV~~ 170 (419)
T 1jk0_A 93 EKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNE 170 (419)
T ss_dssp GGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHH--TCCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred HCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2178665789886367074677999999999976999422173002999865--59999999999999999999999970
Q ss_pred HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 5666401330577999999999999997789999999971464699---9999972001898778899999740121010
Q gi|254780845|r 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175 (352)
Q Consensus 99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~ 175 (352)
++...+++.++.||+++++++|++||+||+++||+|++++++|+++ +|+++.+.|.+++|++|+.++++.
T Consensus 171 nl~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~iietl~~d~~e~~~lf~~~~~~~~l~~Ka~~~~~~~~~------- 243 (419)
T 1jk0_A 171 NLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD------- 243 (419)
T ss_dssp HHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------
T ss_conf 2899999867799999999999999999999999999855588888999999998777999888999987556-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 26777401499999999740001444114788998997598012899999998566666999999999765537542206
Q gi|254780845|r 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 (352)
Q Consensus 176 ~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~ 255 (352)
.+..+.++++ +.+++|||+||+||+++++|+++|+|+|++++|++|+|||++|+.|++.|++.++.+.|
T Consensus 244 -----~~~~~~~~lv-a~~~lEGI~F~ssFa~i~~l~~~g~M~Gl~~~i~~I~RDE~lH~~f~~~L~~~l~~e~~----- 312 (419)
T 1jk0_A 244 -----ADALFGERLV-AFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD----- 312 (419)
T ss_dssp -----SSCCHHHHHH-HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-----
T ss_pred -----HHHHHHHHHH-HHHHCCCEEHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_conf -----7899999989-87723401000018999999965851526998899998999999999999999873210-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 78999999999999876886887518884799989999999999999999788798899988832578997178867555
Q gi|254780845|r 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 (352)
Q Consensus 256 ~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~tnF 335 (352)
.+++.+++.+||++|.+|+.++++.+++||+++++++||+|+||+||.+||++++|++ +||+|||+. ++..++|||
T Consensus 313 --~~~v~~~i~eavelE~e~~~~~l~~~l~Gln~~~m~~YIky~Anr~L~~LG~~~~f~~-~NP~~wme~-i~~~~ktnF 388 (419)
T 1jk0_A 313 --PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-ENPFDFMEN-ISLAGKTNF 388 (419)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCC-CCCCGGGGC----------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHH-HCCCCCCCC
T ss_conf --7899999999999999999873278757999999999999999999997699987899-998368887-345787777
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 766711221058677
Q gi|254780845|r 336 FETRVTEYQQGAELK 350 (352)
Q Consensus 336 Fe~~~t~Y~k~~~~~ 350 (352)
||+|||+|+|||.+.
T Consensus 389 FE~rvt~Y~k~~v~~ 403 (419)
T 1jk0_A 389 FEKRVSDYQKAGVMS 403 (419)
T ss_dssp ---------------
T ss_pred CCCCHHHHHHCCCCC
T ss_conf 667688887623666
No 6
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=0 Score=585.65 Aligned_cols=318 Identities=28% Similarity=0.518 Sum_probs=292.8
Q ss_pred CCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 64100065457881337486889980001786167999999999945798703674798998520268998999999999
Q gi|254780845|r 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~ 85 (352)
...+.+++..+....+++|++++++|++++|+||||+|++|++++++||+|+|||+++|++||++ ||+.||++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~il~~~~~r~~~~PikYp~~~~ly~k~~~~fW~peEi~ls~D~~dw~~---L~~~Ek~~~~~~ 91 (349)
T 2p1i_A 15 KQEKEFSDFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---LNVNEKHFIKHV 91 (349)
T ss_dssp --------------------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHH---SCTTTHHHHHHH
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHH
T ss_conf 11443131767630588555789996013698586999999999976999403174221788986---999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 99998643333455666401330577999999999999997789999999971464699---999997200189877889
Q gi|254780845|r 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 (352)
Q Consensus 86 l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~ 162 (352)
|++|+++|++|+++++..+++.++.||+++++++|+++|+||++|||++++++++++++ .|.++.+.|.+++|..|+
T Consensus 92 L~~f~~~D~~v~~~~~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~e~~~~~~~~~~~~~l~~k~~~~ 171 (349)
T 2p1i_A 92 LAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWA 171 (349)
T ss_dssp HHHHTTC-----CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999842699998865709999999999999999999999999993457788999999996429889999998
Q ss_pred HHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997401210102677740149999999974000144411478899899759801289999999856666699999999
Q gi|254780845|r 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~ 242 (352)
.+++. ....+..+ +++++++|||+|||||+++++|+++|+|+|++++|++|+|||++|+.|++.++
T Consensus 172 ~~~~~-------------~~~~~~~~-lv~~~~lEgi~f~s~F~~~~~~~~~~~m~g~~~~i~~I~RDE~lH~~f~~~l~ 237 (349)
T 2p1i_A 172 AKWIN-------------DTNSFAER-IVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIY 237 (349)
T ss_dssp HHTSS-------------CSSCHHHH-HHHHHHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCC-------------CCHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 75210-------------00479999-99998766555524659999987458302059887887542878998999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 97655375422067899999999999987688688751888479998999999999999999978879889998883257
Q gi|254780845|r 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 (352)
Q Consensus 243 ~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W 322 (352)
+.+..+.| .+++++++.+||++|.+|++++++.+++||+++++++||+|+||+||.+||++|+|++ +||+||
T Consensus 238 ~~l~~e~~-------e~~v~~~~~eave~E~~~~~~~~~~~~~gl~~~~~~~yi~y~an~~L~~LG~~~~f~~-~nP~~w 309 (349)
T 2p1i_A 238 SLLENKLP-------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHS-KNPFNW 309 (349)
T ss_dssp HTCSSCCC-------HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCC-CCSCCC
T ss_pred HHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCH
T ss_conf 99752088-------7899999999999999999997022533456999999999999999997799999999-999545
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899717886755576671122105867
Q gi|254780845|r 323 MSEVIDLKKEKNFFETRVTEYQQGAEL 349 (352)
Q Consensus 323 ~~~~~~~~~~tnFFe~~~t~Y~k~~~~ 349 (352)
|+ .+++.++|||||+|||+|+|||..
T Consensus 310 ~~-~~~~~~ktnFFe~r~t~Y~k~~~~ 335 (349)
T 2p1i_A 310 MD-LISLQGKTNFFEKRVADYQKSGVM 335 (349)
T ss_dssp ---------------------------
T ss_pred HH-HHCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 77-853576778888876764316666
No 7
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=0 Score=568.03 Aligned_cols=307 Identities=23% Similarity=0.421 Sum_probs=282.5
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13374868899800017861679999999999457987036747989985202689989999999999999864333345
Q gi|254780845|r 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 (352)
Q Consensus 19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~ 98 (352)
..+++++.++++|++++|+||||+|++|++++++||+|+|||+++|++||++ ||++||++++++|++|+++|++|++
T Consensus 22 ~~~e~~l~en~~r~~~~PikY~~~~~~ykk~~~~fW~peEi~ls~D~~d~~~---Ls~~Er~~~~~~L~~~~~~D~~v~~ 98 (345)
T 1jk0_B 22 EKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSDNLVNK 98 (345)
T ss_dssp TTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTT---SCTTHHHHHHHHHHHHC--------
T ss_pred CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2368655689886243286787999999999976998201170644898986---9999999999999999999999998
Q ss_pred HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
Q ss_conf 5666401330577999999999999997789999999971464699--99999720018987788999997401210102
Q gi|254780845|r 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 (352)
Q Consensus 99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e--~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~ 176 (352)
++...+.+.++.||+++++++|+++|+||++|||+|+++++.++++ +|+++.+.|.++.|..|+.++++
T Consensus 99 ~~~~~~~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~~l~~d~~~~~~f~~~~~~~~~~~k~~~~~~~~~--------- 169 (345)
T 1jk0_B 99 YLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWIS--------- 169 (345)
T ss_dssp -CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTSCSGGGGCSCHHHHHHHHHHHHTTS---------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_conf 78999998778399999999999999999999999999854674688999999843999999888775125---------
Q ss_pred CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 67774014999999997400014441147889989975980128999999985666669999999997655375422067
Q gi|254780845|r 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 (352)
Q Consensus 177 ~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~ 256 (352)
..+..+..++++ ++++|||+|||||+++++|+++|+|+|+|++|++|+|||++|+.|++.+++.++.+.|
T Consensus 170 ---~~~~~~~~~li~-~~~~Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~------ 239 (345)
T 1jk0_B 170 ---NDDSLYAERLVA-FAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPN------ 239 (345)
T ss_dssp ---SSSCCHHHHHHH-HHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC------
T ss_pred ---CCHHHHHHHHHH-HHHCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------
T ss_conf ---637889999999-8731110002420677799760974115999889886899999999999999751000------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 89999999999998768868875188847999899999999999999997887988999888325789971788675557
Q gi|254780845|r 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 (352)
Q Consensus 257 ~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~tnFF 336 (352)
.+.+.+++++||++|.+|+.++++.+++||+++++++||+|+||+||.+||++|+|++ +||+|||++..+ .++||||
T Consensus 240 -~~~i~~~~~eave~e~~~~~~~~~~~~~gl~~~~~~~Yi~y~an~~L~~lG~~~~f~~-~nP~~w~~~~~~-~~ktnFF 316 (345)
T 1jk0_B 240 -PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNA-VNPFEFMEDVAT-AGKTTFF 316 (345)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHC-CCCCCCC
T ss_conf -3589999999999999999854565533658999999999999999997799987899-997489998737-6776445
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 66711221058677
Q gi|254780845|r 337 ETRVTEYQQGAELK 350 (352)
Q Consensus 337 e~~~t~Y~k~~~~~ 350 (352)
|+|||+|+|+|.+.
T Consensus 317 e~r~t~Y~k~~~~~ 330 (345)
T 1jk0_B 317 EKKVSDYQKASDMS 330 (345)
T ss_dssp --------------
T ss_pred CCCHHHCCCCCCCC
T ss_conf 77633120355566
No 8
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=100.00 E-value=0 Score=537.66 Aligned_cols=297 Identities=21% Similarity=0.278 Sum_probs=274.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH
Q ss_conf 01786167999999999945798703674798998520268998999999999999986433334556664013305779
Q gi|254780845|r 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 (352)
Q Consensus 33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E 112 (352)
+++-++|+|.+++|+|++++||+|+||||++|++||++ ||+.||++++++|++|+++|++|++++...+++.++.||
T Consensus 10 nwn~~~~~~~~~ly~k~~~~fW~peEi~l~~D~~d~~~---L~~~er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~pE 86 (319)
T 3n37_A 10 NWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPH 86 (319)
T ss_dssp CTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHTT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 38788747899999999967999624384653999865---999999999999999999999997354999987658799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 999999999999977899999999714646--999999972001898778899999740121010267774014999999
Q gi|254780845|r 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 (352)
Q Consensus 113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 190 (352)
+++++++|+++|+||++|||+++++++.++ +++|.++.++|.+.+|++|+.++++. +. .+.++
T Consensus 87 ~~~~l~~q~~~E~iHs~sYs~il~~l~~~~~~~~~~~~~~~~~~l~~k~~~~~~~~~~-------------~~-~~~~~- 151 (319)
T 3n37_A 87 EEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRG-------------DD-PLKKK- 151 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHS-------------SC-HHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CH-HHHHH-
T ss_conf 9999999999999999999999997436555789999998612877656787762145-------------50-89999-
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99740001444114788998997598012899999998566666999999999765537542206789999999999998
Q gi|254780845|r 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 (352)
Q Consensus 191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave 270 (352)
++++++|||+|||||+++++|+++|+|||+|++|++|+|||++|+.|++.+++++++|.|..+++++.+++++++++||+
T Consensus 152 i~~~~lEGi~F~s~Fa~~~~~~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~~~~~~~~~~~i~e~~~eav~ 231 (319)
T 3n37_A 152 IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYD 231 (319)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999889999876999999845488856899999999788899999999999876528487765689999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7688688751888479998999999999999999978879889998---8832578997178867555766711221058
Q gi|254780845|r 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 (352)
Q Consensus 271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~---~nP~~W~~~~~~~~~~tnFFe~~~t~Y~k~~ 347 (352)
+|.+|++++++. |++++++++||+|+||+||.+||++|+|+.. .||+||+...+++.++|||||+|||+|+||+
T Consensus 232 ~E~~~~~~~~~~---g~~~~~~~~yiky~an~~L~~lG~~~~f~~~~~~~nP~~w~~~~~~~~~~~nFFE~~~t~Y~k~~ 308 (319)
T 3n37_A 232 NELQYTDELYAE---TPWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMGK 308 (319)
T ss_dssp HHHHHHHHHSTT---SSCHHHHHHHHHHHHHHHHHHTTCCCCSCGGGCCCCHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCC
T ss_conf 999999998744---64227799999999999999779998889865788956899872066645688788701021056
Q ss_pred CCC
Q ss_conf 677
Q gi|254780845|r 348 ELK 350 (352)
Q Consensus 348 ~~~ 350 (352)
+.+
T Consensus 309 ~~~ 311 (319)
T 3n37_A 309 AVE 311 (319)
T ss_dssp ---
T ss_pred CCC
T ss_conf 787
No 9
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=100.00 E-value=0 Score=538.26 Aligned_cols=292 Identities=27% Similarity=0.516 Sum_probs=268.3
Q ss_pred CHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 10006545788133748688998000178616799999999994579870367479899852026899899999999999
Q gi|254780845|r 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~ 87 (352)
++.++...+....+++|++++++|++++|+||||+|++|++++++||+|+|||+++|++||++ ||++||++++++|+
T Consensus 16 ~~~~~~~~~~~~~~e~il~~n~~r~~~~PikYp~~~~ly~k~~~~fW~peEi~ls~D~~d~~~---Ls~~Ek~~~~~~L~ 92 (311)
T 2o1z_A 16 EKKFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKHFIKHVLA 92 (311)
T ss_dssp -CHHHHHHHTTGGGCGGGSCCCSCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---CCHHHHHHHHHHHH
T ss_conf 553203655432279776899985113798776999999999977999410677552788987---89999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 998643333455666401330577999999999999997789999999971464699---99999720018987788999
Q gi|254780845|r 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQ 164 (352)
Q Consensus 88 ~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~ 164 (352)
+|+++|++|+++++..+++.++.||+++++++|+++|+||++|||++++++++|+.+ .|+++.+.|.+++|..|+.+
T Consensus 93 ~~~~~D~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~~~~~~~~~~~~~~~l~~k~~~~~~ 172 (311)
T 2o1z_A 93 FFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAK 172 (311)
T ss_dssp HHHHC-------CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998899970189999886680999999999999999999999999999635688888999998512999999999852
Q ss_pred HHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99740121010267774014999999997400014441147889989975980128999999985666669999999997
Q gi|254780845|r 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 (352)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~ 244 (352)
+++ .+..+..+ +++++++|||+|||||+++++|+++|+|+|+|++|++|+|||++|+.|++.+++.
T Consensus 173 ~~~-------------~~~~~~~~-lv~~~~lEGi~F~s~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~ 238 (311)
T 2o1z_A 173 WIN-------------DTNSFAER-IVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSL 238 (311)
T ss_dssp HSS-------------TTSCHHHH-HHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCC-------------CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 033-------------42779999-9999999999996539999999856941508999999981498999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 65537542206789999999999998768868875188847999899999999999999997887988999888325789
Q gi|254780845|r 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 (352)
Q Consensus 245 l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~ 324 (352)
+..+.| .+++++++++||++|++|++++++.+++|||.+++++||+|+||+||.+||++|+|++ +||+|||+
T Consensus 239 l~~~~~-------~e~i~~~~~eavelE~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~~L~~lGl~~~f~~-~NP~~Wme 310 (311)
T 2o1z_A 239 LENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHA-KNPFNWMD 310 (311)
T ss_dssp CSSCCC-------HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCC-CCCCTTTT
T ss_pred HHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCC
T ss_conf 853299-------9999999999999999999987679867999999999999999999997789998999-99987616
No 10
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A 1uzr_A*
Probab=100.00 E-value=0 Score=531.08 Aligned_cols=296 Identities=20% Similarity=0.299 Sum_probs=271.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH
Q ss_conf 01786167999999999945798703674798998520268998999999999999986433334556664013305779
Q gi|254780845|r 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 (352)
Q Consensus 33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E 112 (352)
+++-++|+|+.++|+|++++||+|+||||++|++||++ ||+.||++++++|++|+++|++|++++...+++.++.||
T Consensus 20 nwn~~~~~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~---Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~e 96 (329)
T 3dhz_A 20 NWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMH 96 (329)
T ss_dssp CTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 77768768899999999967999766381654998876---999999999999999999999998133887710257789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 9999999999999778999999997146469--99999972001898778899999740121010267774014999999
Q gi|254780845|r 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 (352)
Q Consensus 113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 190 (352)
+++++++|+++|+||++|||+|+++++.+++ ++|+++.++|.+++|++++.++++.- . ...++
T Consensus 97 ~~~~~~~~~~~E~iHs~sYs~il~~l~~~~~~~~~f~~~~~~~~l~~k~~~~~~~~~~~-------------~-~~~~~- 161 (329)
T 3dhz_A 97 EEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGD-------------D-PLKKK- 161 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSS-------------C-HHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------------H-HHHHH-
T ss_conf 99999999999999999999999871478358999998860738765578999986447-------------7-99999-
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99740001444114788998997598012899999998566666999999999765537542206789999999999998
Q gi|254780845|r 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 (352)
Q Consensus 191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave 270 (352)
++++++||++|||||+++++|+++|+|+|+|++|+||+|||++|+.|++.++++++++.|+++++++++++++++++||+
T Consensus 162 v~~~~lEGi~F~s~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eav~ 241 (329)
T 3dhz_A 162 VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYE 241 (329)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999261999999977798834799999998548999999999999887776799888779999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76886887518884799989999999999999999788798899988---832578997178867555766711221058
Q gi|254780845|r 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 (352)
Q Consensus 271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~---nP~~W~~~~~~~~~~tnFFe~~~t~Y~k~~ 347 (352)
+|++|++++|++ +|++ +++++||+|+||+||.+||++|+|++.+ ||++|+...+++.+++||||+|||+|+||+
T Consensus 242 ~E~~~~~~~f~~--~gl~-~~i~~Yiky~an~rL~~lG~~~~f~~~~~~~~P~~~~~~~~~~~~~~nFFE~~~t~Y~~~~ 318 (329)
T 3dhz_A 242 NEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYVIGK 318 (329)
T ss_dssp HHHHHHHHHHTT--TTCH-HHHHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC---------------------
T ss_pred HHHHHHHHHHCC--CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCC
T ss_conf 999999998643--4636-9999999999999999779998889766789816699872056756787547633102135
Q ss_pred CC
Q ss_conf 67
Q gi|254780845|r 348 EL 349 (352)
Q Consensus 348 ~~ 349 (352)
..
T Consensus 319 ~~ 320 (329)
T 3dhz_A 319 AE 320 (329)
T ss_dssp --
T ss_pred CC
T ss_conf 56
No 11
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A*
Probab=100.00 E-value=0 Score=477.10 Aligned_cols=274 Identities=20% Similarity=0.317 Sum_probs=252.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHH
Q ss_conf 17861679999999999457987036747989985202689989999999999999864333345566640133057799
Q gi|254780845|r 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 (352)
Q Consensus 34 l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~ 113 (352)
++-++|||.+++|+|++++||+|+||||++|++||++ ||++||++++++|++|+++|++|++++...+++.++.||+
T Consensus 20 wn~~~~~~~~~~~~k~~~~fW~p~Ei~l~~D~~dw~~---Lt~~E~~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~E~ 96 (296)
T 3mjo_A 20 WNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHE 96 (296)
T ss_dssp TTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHH
T ss_conf 8878868899999999967999742182744998866---9999999999999999999999984148877023476999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf 999999999999778999999997146469--999999720018987788999997401210102677740149999999
Q gi|254780845|r 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 (352)
Q Consensus 114 ~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 191 (352)
++++++|+++|+||+++||+++++++.+++ ++|+++.+.|.+++|++++.++++. +.. +.+. +
T Consensus 97 ~~~~~~~~~~E~iH~eaYs~il~~l~~~~~~~~~f~~~~~~~~l~~k~~~i~~~~~~-------------~~~-~~~~-v 161 (296)
T 3mjo_A 97 EAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNG-------------DDP-LKKK-V 161 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS-------------SCH-HHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------------HHH-HHHH-H
T ss_conf 999999999999999999999986058857999999885375777778999987312-------------689-9999-9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97400014441147889989975980128999999985666669999999997655375422067899999999999987
Q gi|254780845|r 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 (352)
Q Consensus 192 ~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~ 271 (352)
+++++||++|||||+++++|+++|+|+|++++|+||+|||++|+.|++.++++++++.|+.+++++++++++++++||++
T Consensus 162 ~~~~lEGi~f~s~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~e~~~~~~~~~~~~i~~~~~~ave~ 241 (296)
T 3mjo_A 162 ASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYEN 241 (296)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999994549999998767988347999999999999999999999998878778999888899999999999999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHC
Q ss_conf 6886887518884799989999999999999999788798899988832-57899717
Q gi|254780845|r 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328 (352)
Q Consensus 272 E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~-~W~~~~~~ 328 (352)
|++|++++|+. +|++ +++++||+|+||+||++||++|+|+++++|. ||+...++
T Consensus 242 E~~~~~~~~~~--~gl~-~~i~~yv~y~an~~L~~lG~~~~f~~~~~~~~P~i~~~l~ 296 (296)
T 3mjo_A 242 EIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 296 (296)
T ss_dssp HHHHHHHHHTT--TTCH-HHHHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC
T ss_pred HHHHHHHHHHC--CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 99999998702--5729-9999999999999999788999999876888878872039
No 12
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=411.58 Aligned_cols=293 Identities=19% Similarity=0.271 Sum_probs=244.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 8688998000178616799999999994579870367479899852026899899999999999998643333455666-
Q gi|254780845|r 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL- 102 (352)
Q Consensus 24 ~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~- 102 (352)
+..|.-||+. +| +.+|+|++++||+|+|||+++|+.||++ ||+.||++++++|++|+.+|++|++++..
T Consensus 18 ~~~~g~nw~~-~~------~~ly~k~~~~fW~p~Eidls~D~~dw~~---Ls~~Er~~~~~iL~~f~~~D~~v~~~l~~l 87 (323)
T 3ee4_A 18 LAAGGLNWAS-LP------LKLFAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPF 87 (323)
T ss_dssp GSTTCCCTTS-HH------HHHHHHHHHTCCCGGGSCCTTHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHCCCCCCCC-CH------HHHHHHHHHCCCCHHHCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5406878020-28------9999999873998352780734999987---999999999999999999999999549999
Q ss_pred -HCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHCCCCC
Q ss_conf -401330577999999999999997789999999971464699999997200189877889999-974012101026777
Q gi|254780845|r 103 -AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-TQTLSSPSFTTGTKD 180 (352)
Q Consensus 103 -~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~ 180 (352)
.+.+.++.||+++|+++|+++|+||++|||++++++++++ ++++++.+.|.++.|..+.... +..+ ...+
T Consensus 88 ~~~~~~~~~~e~~~~~~~q~~~EaiH~esYs~il~tl~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~ 159 (323)
T 3ee4_A 88 MSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDLPAYRQIFYAELPECLNAL-------SADP 159 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS-CCGGGGTTCHHHHHHHHTHHHHHHHHH-------HHCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHH-------CCCC
T ss_conf 98720058599999999999999879999999999855498-888875204899999999999999874-------3699
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 401499999999740001444114788998997-5980128999999985666669999999997655375422067899
Q gi|254780845|r 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 (352)
Q Consensus 181 ~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~-~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~ 259 (352)
.++.++++++++++++|||+|||||+++++|.+ +|+|||++++|++|+|||++|+.||+.+++.+++|+|++++ .+++
T Consensus 160 ~~~~~~~~lv~~~~ilEGi~f~sgF~~~~~~~~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~-~~~~ 238 (323)
T 3ee4_A 160 SPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFET 238 (323)
T ss_dssp CHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHH
T ss_conf 889999999999999879999889999999988668883299999999966999999999999999874930448-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCC
Q ss_conf 9999999999876886887518884799989999999999999999788798899988832578997178867-555766
Q gi|254780845|r 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFET 338 (352)
Q Consensus 260 ~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~-tnFFe~ 338 (352)
++++++.+|+++|.++.....+..++|++.+ +||+|+||++|++||.-+ ....+|++|++-..+.... ..|.+.
T Consensus 239 ~i~el~~~a~e~e~~~~~~~~~~~~~gl~~e---~yv~Yvad~~l~~LG~i~--~a~~~p~~~~d~~~~p~~l~~~f~~~ 313 (323)
T 3ee4_A 239 RMNELIPLALRLIEEGFALYGDQPPFDLSKD---DFLQYSTDKGMRRFGTIS--NARGRPVAEIDVDYSPAQLEDTFADE 313 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCSTTCCHH---HHHHHHHHHHHHHHHHHH--TTTTCCGGGTCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHHHHHHHHHHHHCCCCC--CCCCCCHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999987077766799999---999999999998779931--24469977657778979999999999
Q ss_pred CC
Q ss_conf 71
Q gi|254780845|r 339 RV 340 (352)
Q Consensus 339 ~~ 340 (352)
..
T Consensus 314 ~~ 315 (323)
T 3ee4_A 314 DR 315 (323)
T ss_dssp --
T ss_pred HH
T ss_conf 99
No 13
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 2rdb_A*
Probab=99.24 E-value=1.1e-08 Score=77.37 Aligned_cols=222 Identities=13% Similarity=0.051 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--
Q ss_conf 689989999999999999864333345566640133057799999999999999778999999997146469999999--
Q gi|254780845|r 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY-- 149 (352)
Q Consensus 72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~-- 149 (352)
..+++.-...++..++.+..++-...... ..+.+.++.++++.+.++|+..|..|++...++...++.+... |+..
T Consensus 82 ~~~dprwve~Lk~~l~~~~~~Ey~A~~~~-A~l~r~ap~~~~Rnaaa~Q~lDElRHaQ~~~~l~~~~~~~~~~-~d~~~k 159 (491)
T 2inc_A 82 DRADPGWVSTMQLHFGAIALEEYAASTAE-ARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRK-WDWAHK 159 (491)
T ss_dssp GTSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGG-GGHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHH
T ss_conf 12898999999999841247999999999-9999867987899999999999999999999999987145777-625666
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf ---72001898778899999740121010267774014999999997400014441147889989975980128999999
Q gi|254780845|r 150 ---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 (352)
Q Consensus 150 ---~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~ 226 (352)
.+++..+. ..+..+... ......+..++-++++|+++....|..+..++..+.-+.+.+++..
T Consensus 160 a~~~~~~~~~~----~R~~fEd~l----------~~~dw~e~~ial~lv~E~~ftnL~fv~f~~~Aa~nGD~~t~t~~~s 225 (491)
T 2inc_A 160 AIHTNEWAAIA----ARSFFDDMM----------MTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISS 225 (491)
T ss_dssp GGGSCCHHHHH----HHHHHHHHT----------TSSCHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCHHHH----HHHHHHHHH----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 20554601678----899988641----------1487799998898848987778988777999987578207999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCCCH-HHHHHHHHHHHH
Q ss_conf 985666669999999997655375422067899999999999987688----688751888479998-999999999999
Q gi|254780845|r 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA----YAHETMPKGFVGLNA-PSCEQYMQFIAN 301 (352)
Q Consensus 227 I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~----~~~~~~~~~~~Gl~~-~~~~~yi~y~an 301 (352)
|.+||++|+.+|..+++.+.++.+ ....++.+...+-.+..+=.. ..+|-.+...-..+- +.+.+.|-=.-=
T Consensus 226 iqsDEaRH~~~G~~~l~~l~e~~~---~~~lQ~~vd~~fW~~~r~~~~l~g~~~dY~~p~~~~~~s~~e~~~ew~~~~~~ 302 (491)
T 2inc_A 226 IQTDESRHAQQGGPSLKILVENGK---KDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFE 302 (491)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 605898988758999999985787---79999999999998889999999989874485545287899999999899999
Q ss_pred HHHHHCCCCCC
Q ss_conf 99997887988
Q gi|254780845|r 302 RRCHQIGLEPL 312 (352)
Q Consensus 302 ~rL~~lG~~~~ 312 (352)
++|..+|+++.
T Consensus 303 ~~l~~yGl~~P 313 (491)
T 2inc_A 303 RQLLDLGLDKP 313 (491)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHHCCCCC
T ss_conf 99998389987
No 14
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A
Probab=98.88 E-value=7.6e-07 Score=64.64 Aligned_cols=219 Identities=15% Similarity=0.091 Sum_probs=138.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-----
Q ss_conf 998999999999999986433334556664013305779999999999999977899999999714646999999-----
Q gi|254780845|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM----- 148 (352)
Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~----- 148 (352)
+++.-++.++..++.+..++-....+. ..+.+..+.++++.+..+|+..|..|++...+++..++..... |+.
T Consensus 85 ~dprw~e~Lk~~l~~~~~~Ey~A~~~~-A~l~r~ap~~~~R~aaa~Q~~DElRHaQ~~~~l~~~~~~~~~~-f~~a~k~~ 162 (500)
T 3ge3_A 85 SDPGWISTLKSHYGAIAVGEYAAVTGE-GRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQ-FDWAWRAY 162 (500)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGG-GGHHHHGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHH
T ss_conf 999999999999840328999999999-9999867988899999999999999999999999997233656-55677876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 97200189877889999974012101026777401499999999740001444114788998997598012899999998
Q gi|254780845|r 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 (352)
Q Consensus 149 ~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~ 228 (352)
+.++|..+. ..+..+.+. ....-.+..+.-++++|+++=-..|..+-..+..+-=+-+++++..|.
T Consensus 163 ~~~~p~~q~----~R~~fEd~l----------~~~dw~E~~valn~v~E~~~tnL~~v~f~~~Aa~nGD~~~~tv~~siq 228 (500)
T 3ge3_A 163 HSNEWAAIA----AKHFFDDII----------TGRDAISVAIMLTFSFETGFANMQFLGLAADAAEAGDYTFANLISSIQ 228 (500)
T ss_dssp GSCCHHHHH----HHHHHHHHT----------TSSCHHHHHHHTCCCCCCCCHHHHHTHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCCHHHH----HHHHHHHHH----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 424800689----999998776----------138889998878765786443789988899998746876999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHH---
Q ss_conf 56666699999999976553754220678999999999999876886887518884----79998999999999999---
Q gi|254780845|r 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF----VGLNAPSCEQYMQFIAN--- 301 (352)
Q Consensus 229 RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~----~Gl~~~~~~~yi~y~an--- 301 (352)
+||++|+.+|..+++.+.+.. ..+..++++...+-.+..+=...+-.+++-+. --.+-+++ +-+++..
T Consensus 229 sDEaRH~~~G~~~lk~l~e~~---n~~~lQ~~vd~wfwr~~~~~~~l~G~~~dY~~~~~~r~~s~~e~--~~ew~~g~~~ 303 (500)
T 3ge3_A 229 TDESRHAQQGGPALQLLIENG---KREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEF--MYEWIIGQFE 303 (500)
T ss_dssp HHHHHHGGGHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHH--HHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHHHHHH
T ss_conf 899999985899999999677---66999999999999889999988888888448663225349999--9999889999
Q ss_pred HHHHHCCCCCCC
Q ss_conf 999978879889
Q gi|254780845|r 302 RRCHQIGLEPLF 313 (352)
Q Consensus 302 ~rL~~lG~~~~f 313 (352)
++|..+|+++.-
T Consensus 304 ~~L~~~Gl~~P~ 315 (500)
T 3ge3_A 304 RSLIDLGLDKPW 315 (500)
T ss_dssp HHHHHTTCCCCT
T ss_pred HHHHHHCCCCCH
T ss_conf 999982799863
No 15
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=98.60 E-value=2.7e-05 Score=54.04 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH---HHHH
Q ss_conf 8998999999999999986433334556664013305779999999999999977899999999714---646---9999
Q gi|254780845|r 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---LDE---GELF 146 (352)
Q Consensus 73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~---~~~---~e~f 146 (352)
++++.-.++++..++.+..++-...... ..+.+.++.++++.+..+|+..|..|++...+....+. .++ ....
T Consensus 80 ~~dprw~~~lk~~l~~~~~~Ey~A~~~~-A~l~r~~p~~~~rn~a~~Q~lDElRH~Q~~~~~~~~l~~~~~~~~~~~~~r 158 (512)
T 1mty_D 80 RVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDAR 158 (512)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTTHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 3897899999999712067999999999-999975884878999999877899999999999999985479962466788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99972001898778899999740121010267774014999999997400014441147889989975980128999999
Q gi|254780845|r 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 (352)
Q Consensus 147 ~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~ 226 (352)
.+...+|.-+.- .+..++.- .+. .-++.+++.+++.|.++=-..|..+-+.+..+-=.-+.+.+..
T Consensus 159 ~~~~~~Piwq~~----r~~fed~~------~t~----D~~E~~ial~~v~E~~ftnllfv~f~~~Aa~nGD~~~~tl~~S 224 (512)
T 1mty_D 159 RTRTIGPLWKGM----KRVFSDGF------ISG----DAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLS 224 (512)
T ss_dssp HHGGGSSHHHHH----HHHHTHHH------HSS----CHHHHHHHHTTTHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHCCCHHHHH----HHHHHHHH------HCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 873005046779----99999888------528----8999999999779988778999999999997689758999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCC-HHHHHHHH-HHHH
Q ss_conf 9856666699999999976553754220678999999999999876886----8875188847999-89999999-9999
Q gi|254780845|r 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY----AHETMPKGFVGLN-APSCEQYM-QFIA 300 (352)
Q Consensus 227 I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~----~~~~~~~~~~Gl~-~~~~~~yi-~y~a 300 (352)
|..||++|..+|..++..+.++ |+- .+..+..+...+-....+=... .+|..+.- -.+ ++.-+.|| +...
T Consensus 225 iqsDEaRH~~~g~~tL~~ll~d-~~n-~~~~q~~id~aFWr~~r~~~~l~G~~mDY~tp~r--~~s~~e~w~~~i~ed~~ 300 (512)
T 1mty_D 225 IETDELRHMANGYQTVVSIAND-PAS-AKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFK--VEPWVKTWDRWVYEDWG 300 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC--SSCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHCCHHHHHHHHHC-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHH
T ss_conf 9814988865229999999846-203-7999999999999999999999988887078765--41699999999999999
Q ss_pred H---HHHHHCCCCCC
Q ss_conf 9---99997887988
Q gi|254780845|r 301 N---RRCHQIGLEPL 312 (352)
Q Consensus 301 n---~rL~~lG~~~~ 312 (352)
. ++|...|+++.
T Consensus 301 g~~~~~L~~yGl~~P 315 (512)
T 1mty_D 301 GIWIGRLGKYGVESP 315 (512)
T ss_dssp THHHHTTGGGTCCCC
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999998389999
No 16
>2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A
Probab=98.32 E-value=0.00025 Score=47.38 Aligned_cols=222 Identities=15% Similarity=0.073 Sum_probs=140.8
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHH
Q ss_conf 899-8999999999999986433334556664013305779999999999999977899999999714646---999999
Q gi|254780845|r 73 GLT-DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNM 148 (352)
Q Consensus 73 ~Lt-~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~---~e~f~~ 148 (352)
+|+ +.-.++++..++.+..++-....+.. .+.+..+.++++.+..+|+..|..|++-=.+++..+..+- ......
T Consensus 82 ~lsdp~w~~~Lk~~l~~~~~~Ey~a~~~~a-~~~r~a~~~~irn~~~~qa~DelRhaQ~~~~~~~~~~~~~~g~~~~~~~ 160 (494)
T 2inp_A 82 NISDARYVNALKLFISGISPLEHAAFQGYS-KVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHM 160 (494)
T ss_dssp GSSCGGGHHHHHHHHHHTHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCTTHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 379878999999997020389999999999-9987468889999999988899999999999998852146743167887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 97200189877889999974012101026777401499999999740001444114788998997598012899999998
Q gi|254780845|r 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 (352)
Q Consensus 149 ~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~ 228 (352)
+.++|..+..-+++.+... . .-++.+++.++++|.++=-.-|..+...+..+-=.-+..++.-|.
T Consensus 161 w~~~p~~q~~R~~~E~~~t-----------a----D~~E~~valnlv~E~~ftnllfv~l~~~Aa~nGD~~tptl~~S~q 225 (494)
T 2inp_A 161 HDRVWYLSVPKSFFDDARS-----------A----GPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQ 225 (494)
T ss_dssp HTTSGGGHHHHHHHHHHHH-----------S----CHHHHHHHHTTCCCCCSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-----------C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 3348088878999998751-----------4----689999999998998657999999999999877877799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCC-HHHHHHHHHHHHH---H
Q ss_conf 56666699999999976553754220678999999999999876886887518884--7999-8999999999999---9
Q gi|254780845|r 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF--VGLN-APSCEQYMQFIAN---R 302 (352)
Q Consensus 229 RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~--~Gl~-~~~~~~yi~y~an---~ 302 (352)
.||++|...|..+++.++++.|.- .+..+.++...+-.+..+= +.+-.+++-+. -.++ ++..+.++.-... +
T Consensus 226 sDe~RH~~~g~~llk~lle~~~~N-~~~lq~wld~wfWr~~~~~-~l~g~~mdY~~~~r~~s~ke~w~~w~ed~~g~~~~ 303 (494)
T 2inp_A 226 SDEARHMTLGLEVIKFILEQHEDN-VPIVQRWIDKWFWRGFRLL-SLVSMMMDYMLPNKVMSWSEAWEVYYEQNGGALFK 303 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHTCSSCSSCHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998999999998558133-7999999999999999999-98887776068754435999999999999999999
Q ss_pred HHHHCCCCCC
Q ss_conf 9997887988
Q gi|254780845|r 303 RCHQIGLEPL 312 (352)
Q Consensus 303 rL~~lG~~~~ 312 (352)
+|...|+++.
T Consensus 304 ~L~~yGl~~P 313 (494)
T 2inp_A 304 DLERYGIRPP 313 (494)
T ss_dssp HHGGGTCCCC
T ss_pred HHHHHCCCCC
T ss_conf 9998089898
No 17
>2inp_C Phenol hydroxylase component PHL; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_C
Probab=98.13 E-value=0.00063 Score=44.62 Aligned_cols=214 Identities=10% Similarity=0.025 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHH
Q ss_conf 68998999999999999986433334556664013305779999999999999977899999999714646----99999
Q gi|254780845|r 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFN 147 (352)
Q Consensus 72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~----~e~f~ 147 (352)
..|++.-+.++...++-+-..+-....+. ..+....+..-++.+..+|++.|..|++--+++.-.+..++ .+-=.
T Consensus 106 ~~l~~~w~~~l~~~~~p~r~~E~gl~m~~-a~~~r~a~~~~i~~~~~fqa~D~Lr~aQ~l~~~~~~l~~~~g~~~~~~r~ 184 (328)
T 2inp_C 106 TRLSEETQKQLLRLLVPLRHVELGANMNN-AKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKA 184 (328)
T ss_dssp TTSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 10899999999999865889999999999-99861065089999999999999999999999999816898765378999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99720018987788999997401210102677740149999999974000144---411478899899759801289999
Q gi|254780845|r 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAEQY 224 (352)
Q Consensus 148 ~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~~i 224 (352)
.+.++|..+.--++ .+.+.- ...-.+..++.++++|+++ +++.|...+ +.+|-. .++.++
T Consensus 185 ~W~~dp~wQ~~R~~----vE~~lv----------~~Dw~E~~vA~nlv~e~ll~~L~~~~~~~~a--a~~gd~-~~~~l~ 247 (328)
T 2inp_C 185 YWMDDEMWQPMRKL----VEDTLV----------VDDWFELTLVQNILIDGMMYPLVYDKMDQWF--ESQGAE-DVSMLT 247 (328)
T ss_dssp HHHHCGGGHHHHHH----HHHHTT----------CCCHHHHHHHHHTHHHHHHHHHHHTHHHHHH--HHTTCG-GGGGGG
T ss_pred HHHCCHHHHHHHHH----HHHHHH----------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCC-CHHHHH
T ss_conf 98148788999999----999987----------3139999999998899876899999999999--983894-248999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99985666669999999997655375422067899999999999987688688751888479998999999999999999
Q gi|254780845|r 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 (352)
Q Consensus 225 ~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL 304 (352)
..+..|+..|...+..+++.+..|.|+ ....++.|+.+-...|.+.=..++.-+.+ ++...-++-....||
T Consensus 248 ~~~~~d~~r~~rw~~alvk~~~~e~~~-Nr~~l~~Wi~~W~~~a~~Al~~~a~~~~~--------~~a~~~~~~~~~~~l 318 (328)
T 2inp_C 248 EFMRDWYKESLRWTNAMMKAVAGESET-NRELLQKWIDHWEPQAYEALKPLAEASVG--------IDGLNEARAELSARL 318 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHH
T ss_conf 988879999999999999999806832-59999999999999999999988764156--------058999999999999
Q ss_pred HHCCCCCC
Q ss_conf 97887988
Q gi|254780845|r 305 HQIGLEPL 312 (352)
Q Consensus 305 ~~lG~~~~ 312 (352)
..||++..
T Consensus 319 ~~~gL~~~ 326 (328)
T 2inp_C 319 KKFELQSR 326 (328)
T ss_dssp HTTTCCCC
T ss_pred HHCCCCCC
T ss_conf 96699988
No 18
>2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} SCOP: a.25.1.6
Probab=97.94 E-value=0.0014 Score=42.33 Aligned_cols=202 Identities=17% Similarity=0.122 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971464699999997200
Q gi|254780845|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 (352)
Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~ 153 (352)
-|+.-|+.|.++=+.-.-++...-+|+. .+...+ |+-+-=+.+.+-||+.|.+.|.-+=++|+..++--
T Consensus 27 ~s~~YkdAYSRINaIVIEGEqeA~dNyi-~l~~ll--P~~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~-------- 95 (244)
T 2oc5_A 27 TSDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTLL--PDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMD-------- 95 (244)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC--GGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH--------
T ss_pred CCHHHHHHHHHHHEEEEECHHHHHHHHH-HHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH--------
T ss_conf 5088899998740256745087898699-999878--52489999999999988768888633786887918--------
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 189877889999974012101026777401499999999740001444114788998-9975980128999999985666
Q gi|254780845|r 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDES 232 (352)
Q Consensus 154 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~-l~~~g~m~g~~~~i~~I~RDE~ 232 (352)
|..++...+... +... ...-.....+++.++++|. ||+--+ .--.=-=|=-.++-.-+.+||.
T Consensus 96 -------fA~~fF~~LH~n-Fq~A--~~~gkv~tCLlIQaliIE~------FAIaAY~iYIpVAD~FARkITegVVkDEY 159 (244)
T 2oc5_A 96 -------FAREFFAPLRDN-FQTA--LGQGKTPTCLLIQALLIEA------FAISAYHTYIPVSDPFARKITEGVVKDEY 159 (244)
T ss_dssp -------HHHHHHHHHHHH-HHHH--HHTTCHHHHHHHHHTHHHH------HHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHH-HHHH--HHCCCCEEHHHHHHHHHHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf -------999999999899-9999--8669902218899999999------99998661210366777888776764477
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 669999999997655375422067899999999999987688688751888-479998999999999999999978879
Q gi|254780845|r 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310 (352)
Q Consensus 233 lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~~lG~~ 310 (352)
.|..||..-++.-.. .+++++.+--++.+-+-..-.+.+-.+. ++||..+.+.+=.--.-...|.+||+.
T Consensus 160 ~HLN~Ge~WLk~~f~--------~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~IGf~ 230 (244)
T 2oc5_A 160 THLNYGEAWLKANLE--------SCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFN 230 (244)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHCCHHHHHHHHHHH--------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 650258999999999--------99999999888505499999999987899977889999999999999999975975
No 19
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B*
Probab=97.77 E-value=0.0025 Score=40.44 Aligned_cols=186 Identities=9% Similarity=0.035 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH---HHHH
Q ss_conf 8998999999999999986433334556664013305779999999999999977899999999714---646---9999
Q gi|254780845|r 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---LDE---GELF 146 (352)
Q Consensus 73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~---~~~---~e~f 146 (352)
.|++.-+.++...++-+...+-....+. ..+....+.+.++.+..+|++.|..|++--++....|. .+. +.--
T Consensus 109 ~l~~~w~~~l~~~l~p~r~~E~ga~~~~-a~~~r~~~~~~i~~~~~~qa~DelR~aQ~~a~~~~~L~~~~~~~~~~~~~k 187 (327)
T 3ge3_B 109 MVREGWEHTMARCYSPLRYLFHCLQMSS-AYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHER 187 (327)
T ss_dssp GSCTTHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 1899999999999751678999999998-999985686899999999988898999999999999997589975127899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999720018987788999997401210102677740149999999974000144---41147889989975980128999
Q gi|254780845|r 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAEQ 223 (352)
Q Consensus 147 ~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~~ 223 (352)
..+.++|..+.--+++ +.+.. ...-.+.+++.++++|+++ ++..|. ..+..+-=..+..+
T Consensus 188 ~~W~~dp~wQ~~R~~v----E~~l~----------~~Dw~E~~va~nlV~e~l~~~l~~~~~~---~~Aa~nGD~~~~~l 250 (327)
T 3ge3_B 188 ELWEKEPGWQGLRELM----EKQLT----------AFDWGEAFVSLNLVVKPMIVESIFKPLQ---QQAWENNDTLLPLL 250 (327)
T ss_dssp HHHHHCHHHHHHHHHH----HHHTT----------CCSHHHHHHHHHHTHHHHHHHHTHHHHH---HHHHHTTCCHHHHH
T ss_pred HHHCCCCHHHHHHHHH----HHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCHHHH
T ss_conf 9870284578899999----99970----------1348999999999899755699999999---99998689002999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999856666699999999976553754220678999999999999876886887
Q gi|254780845|r 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 (352)
Q Consensus 224 i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~ 278 (352)
+..+..||..|...+..+++.+. |+|+ ...-++.|+.+....+++.-.+++--
T Consensus 251 ~~s~~~D~~Rh~~w~~alvk~~~-ed~~-N~~llq~W~~~W~~~a~~A~~a~~~~ 303 (327)
T 3ge3_B 251 IDSQLKDAERHSRWSKALVKHAL-ENPD-NHAVIEGWIEKWRPLADRAAEAYLSM 303 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TSTH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999995-4936-79999999999899999999986787
No 20
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier protein desaturase; electron transfer, four-helix bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A
Probab=97.76 E-value=0.0024 Score=40.62 Aligned_cols=190 Identities=13% Similarity=0.151 Sum_probs=94.1
Q ss_pred HHHHHHHHHHH---HCCCCCCC-CC------HHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCH
Q ss_conf 79999999999---45798703-67------4798998520-26899899999999999998643333455666--4013
Q gi|254780845|r 40 GWAWEKYLSAC---NNHWMPTE-VP------MQDDLALWKS-KNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYR 106 (352)
Q Consensus 40 ~~~~~ly~k~~---~~fW~peE-i~------l~~D~~dw~t-~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~--~i~~ 106 (352)
||+-+.-..+. ..-|.|.+ || +.....+|.. .+.|++.-+-++...|.-=-.+=+.+. .+.. .+.+
T Consensus 20 ~~ve~~~~~~L~~v~~~W~Phd~lP~~~~~~f~~~~~e~~~~~~~l~~~~~~~lv~nllTEdnLPsY~~-~l~~~~g~~d 98 (338)
T 2uw1_A 20 DWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMS-MLNRCDGIKD 98 (338)
T ss_dssp HHHHHHTGGGSCCGGGCCCGGGGSCCTTSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTHHHHHH-HHTTSTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHH-HHHHHHCCCC
T ss_conf 999999999855452167970359997678844335557665421888999999986650034758999-9987406444
Q ss_pred H--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH
Q ss_conf 3--057799999999999999778999999997146-4699999997200189877889999974012101026777401
Q gi|254780845|r 107 H--LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 (352)
Q Consensus 107 ~--~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~-~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (352)
. ....-...+...|..+|+.|+.+-...+..-+. |+..+..... ..+.+ -..+ +...
T Consensus 99 ~~~~~~~~W~~Wv~~WtAEE~RHg~aL~~YL~~sg~vDp~~lE~~r~---------~~~~~----G~~~-------~~~~ 158 (338)
T 2uw1_A 99 ETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQ---------YLIGS----GMDI-------KSEN 158 (338)
T ss_dssp SSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHH---------HHHHH----CCCC-------CCTT
T ss_pred CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH---------HHHHC----CCCC-------CCCC
T ss_conf 45779975022105532001368899999999957898487799999---------99855----7899-------9888
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 499999999740001444114788998997598012899999998566666999999999765537542
Q gi|254780845|r 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 (352)
Q Consensus 184 ~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l 252 (352)
.-+. .++|..+-|..-+. +...+-.+++.--=|.++++...|++||.+|..|...+++.+.+-+|+-
T Consensus 159 ~p~~-~~vY~sfQE~AT~v-sh~nt~~la~~~gDPvL~~i~~~IA~DE~rH~~fY~~~v~~~le~dPd~ 225 (338)
T 2uw1_A 159 SPYL-GFIYTSFQERATFI-SHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDT 225 (338)
T ss_dssp CHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 8999-99999999999999-9999999998739999999999998899999999999999998539388
No 21
>1za0_A Possible acyl-[acyl-carrier protein] desaturase DESA2 (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: a.25.1.2
Probab=97.74 E-value=0.0028 Score=40.17 Aligned_cols=177 Identities=14% Similarity=0.131 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHH--CCCCCCC-CCHHH-------HHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC
Q ss_conf 799999999994--5798703-67479-------8998520-26899899999999999998643333455666---401
Q gi|254780845|r 40 GWAWEKYLSACN--NHWMPTE-VPMQD-------DLALWKS-KNGLTDDERLMIKRNLGFFASSESLVANNIVL---AIY 105 (352)
Q Consensus 40 ~~~~~ly~k~~~--~fW~peE-i~l~~-------D~~dw~t-~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~---~i~ 105 (352)
|++-+...++.+ .-|.|.| +|-++ +..+|.. .+.|++..+..+.-++ ++-+|++. .+.
T Consensus 16 ~~~~~~~~~hl~~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~~l~~~~~~alv~~l--------ltEdnLP~Y~~~l~ 87 (275)
T 1za0_A 16 PVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILL--------ILKDNLAGHHRELV 87 (275)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHHHH--------HHHHC---------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHEEE--------EECCCCHHHHHHHH
T ss_conf 9999999997515423596124999878870212665388644446545567731133--------21356528889999
Q ss_pred HHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH
Q ss_conf 330-57799999999999999778999999997146-4699999997200189877889999974012101026777401
Q gi|254780845|r 106 RHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 (352)
Q Consensus 106 ~~~-~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~-~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (352)
..+ ..+....+...|..+|+.|..+-...+..-+. |+..+.. .+...+.+-++ +...
T Consensus 88 ~~f~~d~~w~~w~~~WtaEE~RHg~aL~~YL~~sg~vDp~~le~---------~~~~~~~~g~~------------~~~~ 146 (275)
T 1za0_A 88 EHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANED---------VRVQHVMKGYR------------AEKY 146 (275)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTTC---------TTC----------------------CC
T ss_pred HHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH---------HHHHHHHCCCC------------CCCC
T ss_conf 98056408999985265887568999999999956888688799---------99999971667------------8987
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4999999997400014441147889989975980128999999985666669999999997655375
Q gi|254780845|r 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 (352)
Q Consensus 184 ~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p 250 (352)
.-+ ..++|.++-|-.-. .+--++++.-.=|-++++...|++||.+|..|...+++.+.+-+|
T Consensus 147 ~p~-~~l~y~~fqE~aT~----i~y~nla~~~gdPvL~~i~~rIA~DE~rH~~fy~~~v~~~le~dp 208 (275)
T 1za0_A 147 TQV-ETLVYMAFYERCGA----VFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTR 208 (275)
T ss_dssp CHH-HHHHHHHHHHHHHH----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCC-CHHHHEEEEHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 710-04323000024799----999999987699599999999988899999999999999986590
No 22
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B
Probab=97.65 E-value=0.0039 Score=39.17 Aligned_cols=221 Identities=11% Similarity=0.020 Sum_probs=146.5
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----C--HHH
Q ss_conf 8998999-9999999999864333345566640133057799999999999999778999999997146-----4--699
Q gi|254780845|r 73 GLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-----D--EGE 144 (352)
Q Consensus 73 ~Lt~~Ek-~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~-----~--~~e 144 (352)
.|++..+ .++...++-+...+-....+. ..+......+.++.+..+|++.|..|++--+++...|.. + .+.
T Consensus 138 ~l~~~W~~~~L~~~l~p~r~~Eyga~~~~-a~~~r~a~~~~i~na~~fqa~D~lR~aQ~i~~~~~~L~~~~~gf~~~~~~ 216 (395)
T 1mhy_B 138 TIDPYWRDEILNKYFGALLYSEYGLFNAH-SSVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDV 216 (395)
T ss_dssp GSCHHHHHTTHHHHHHHHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 08999999999998755758999999999-99997547599999999988778899999999999985507898725689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999720018987788999997401210102677740149999999974000144---411478899899759801289
Q gi|254780845|r 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIA 221 (352)
Q Consensus 145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~ 221 (352)
-=..+.++|..+.--+++.+.... -..-.+.+++.++++|+++ |++.|..-+ +..+-=.-+.
T Consensus 217 ~K~~W~~dP~wQ~~R~~vE~~l~a-------------~~Dw~E~~vA~nlV~e~l~~~L~~~~f~~~~--Aa~nGD~~tp 281 (395)
T 1mhy_B 217 PKKIWTTDPIYSGARATVQEIWQG-------------VQDWNEILWAGHAVYDATFGQFARREFFQRL--ATVYGDTLTP 281 (395)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHS-------------CCCHHHHHHHHHHTHHHHHHHHHHTTTHHHH--HTTTTCSSHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCHH
T ss_conf 998871280478899999998731-------------6319999999999899753799999988999--9974982059
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC-CCCHHHHHHH
Q ss_conf 9999998566666999999999765537542---206789999999999998768868875188--847-9998999999
Q gi|254780845|r 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPK--GFV-GLNAPSCEQY 295 (352)
Q Consensus 222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l---~~~~~~~~i~~~~~eave~E~~~~~~~~~~--~~~-Gl~~~~~~~y 295 (352)
.++..+..|+..|...+..+++.+..+.|+. ....+..|+.+....|++.=..+.- ++.. .+- ....+-+.+-
T Consensus 282 ~l~~s~q~D~~r~~~~~~alvk~~l~~dp~~~~~Nr~ll~~Wl~~W~~~a~~A~~~l~p-i~~~~p~~~~~~~~~~~~~a 360 (395)
T 1mhy_B 282 FFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLASSVAALKDFVG-LYAKVEKVAGATDSAGVSEA 360 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GGGGSCCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHH
T ss_conf 99998999999999999999999986395005778999999999999999999998688-76326632344658999999
Q ss_pred HHHHHHH----HHHHCCCC
Q ss_conf 9999999----99978879
Q gi|254780845|r 296 MQFIANR----RCHQIGLE 310 (352)
Q Consensus 296 i~y~an~----rL~~lG~~ 310 (352)
++.+.+. .++-||++
T Consensus 361 ~~~v~~d~~~d~a~~~g~~ 379 (395)
T 1mhy_B 361 LQRVFGDWKIDYADKIGFR 379 (395)
T ss_dssp HHHHHHHHHHHTHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 9999988988677643887
No 23
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=97.65 E-value=0.0039 Score=39.17 Aligned_cols=214 Identities=13% Similarity=-0.004 Sum_probs=136.2
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CH--HH
Q ss_conf 8998999-9999999999864333345566640133057799999999999999778999999997146-----46--99
Q gi|254780845|r 73 GLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-----DE--GE 144 (352)
Q Consensus 73 ~Lt~~Ek-~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~-----~~--~e 144 (352)
.|++.-+ .++...|+-+...+-....+. ..+....+.+.++.+..+|++.|..|++.-.+....|++ +. ..
T Consensus 130 ~l~~~W~~~~L~~~l~p~r~~E~ga~~~~-a~~~r~a~~~~i~na~~fqa~DelR~aQ~i~~~~~~L~~~~~gf~~~~~~ 208 (384)
T 1mty_B 130 AMNPTWRDEFINRYWGAFLFNEYGLFNAH-SQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAV 208 (384)
T ss_dssp GSCHHHHHTTTTTHHHHHHHHHHHHHHTT-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 18999999999997501308999999988-99987567499999999998889899999999999998748998620378
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999720018987788999997401210102677740149999999974000144---411478899899759801289
Q gi|254780845|r 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIA 221 (352)
Q Consensus 145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~ 221 (352)
-=..+.++|.-+.--+++.+.... .....+.+++.++++|+++ |++.|..-.+ +.+| =.-+.
T Consensus 209 ~k~~W~~dp~wQg~R~~vE~~l~~-------------~~Dw~E~~vA~NlV~epl~~~L~~~~f~~~~A-a~nG-D~~t~ 273 (384)
T 1mty_B 209 PKAEWTNGEVYKSARLAVEGLWQE-------------VFDWNESAFSVHAVYDALFGQFVRREFFQRLA-PRFG-DNLTP 273 (384)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHT-------------CCCHHHHHHHHHHTHHHHHHHHHHHTTHHHHG-GGGT-CCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC-CHHHH
T ss_conf 988871381678799999999861-------------02199999999886886558999999999999-9849-62579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHH
Q ss_conf 9999998566666999999999765537542---20678999999999999876886887518884799-9899999999
Q gi|254780845|r 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQ 297 (352)
Q Consensus 222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l---~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl-~~~~~~~yi~ 297 (352)
.++..+..||..|...+..+++.+..++|+. ....+..++.+....|++.=.++.- ++.....|. +.+....-+.
T Consensus 274 ~l~~s~q~D~~Rh~~w~~alvk~~l~~Dpe~~~~Nr~ll~~Wl~~W~~~a~~A~~al~p-i~s~~p~~~~~~~~~~a~~~ 352 (384)
T 1mty_B 274 FFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMG-LFAKLPAGTTDKEEITASLY 352 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GGGGSCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999999999999999999985586432557999999999999999999998557-87416778788899999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780845|r 298 FIANRR 303 (352)
Q Consensus 298 y~an~r 303 (352)
.+.+.-
T Consensus 353 rv~~d~ 358 (384)
T 1mty_B 353 RVVDDW 358 (384)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 24
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2rdb_B* 1t0r_B 1t0s_B 1t0q_B* 2ind_B*
Probab=97.10 E-value=0.017 Score=34.86 Aligned_cols=209 Identities=10% Similarity=-0.014 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CH---HHHH
Q ss_conf 89989999999999999864333345566640133057799999999999999778999999997146---46---9999
Q gi|254780845|r 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL---DE---GELF 146 (352)
Q Consensus 73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~---~~---~e~f 146 (352)
.|++.-+.++...++-+...+-..+.+.. .+......+.++.+..+|++.|..|++-.+++...|.. +. ..-=
T Consensus 105 ~l~~~w~~~l~~~l~p~r~~E~ga~~~~a-~~~r~~~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~L~~~~~d~~~~~~~k 183 (322)
T 2inc_B 105 MLTREWVETLARFYTPARYLFHALQMGSV-YIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRER 183 (322)
T ss_dssp GSCHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 08999999999987367699999998789-99986674999999999988898999999999999986389965016899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999720018987788999997401210102677740149999999974000144---41147889989975980128999
Q gi|254780845|r 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAEQ 223 (352)
Q Consensus 147 ~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~~ 223 (352)
..+.++|.-+.-- ++.+.+-. -..-++..++.++++|+++ |++.|... .+.+| =.-+..+
T Consensus 184 ~~W~~dp~wQ~~R----~~vE~~l~----------~~Dw~E~~vA~nlv~epl~~~l~~~~~~~~--A~~~G-D~~~~~l 246 (322)
T 2inc_B 184 DVWENDPAWQGFR----ELIEKALI----------AWDWGEAFTAINLVTKPAVEEALLQQLGSL--AQSEG-DTLLGLL 246 (322)
T ss_dssp HHHHHCHHHHHHH----HHHHHHTT----------CCSHHHHHHHHHTTHHHHHHHHHTHHHHHH--HHHTT-CHHHHHH
T ss_pred HHHHCCCHHHHHH----HHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCC-CCHHHHH
T ss_conf 9881396058899----99998870----------035999999999989987469999999999--99869-9200999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99998566666999999999765537542206789999999999998768868875188847999899999999999999
Q gi|254780845|r 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 (352)
Q Consensus 224 i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~r 303 (352)
+..+..|+..|...+..+++.+.+ .++ ...-++.++.+....|.+.=..++. +++.+ +..-.-.+-....+
T Consensus 247 ~~~~~~d~~r~~~w~~alvk~~~e-~~~-N~~ll~~W~~~W~~~a~~Al~~~~~-~~~~~------~~a~~~a~~a~~~~ 317 (322)
T 2inc_B 247 AQAQKRDAERHRRWSSALVKMALE-KEG-NREVLQKWVAKWEPLADKAIEAYCS-ALPDG------ENAIVEAKSASRYV 317 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-STT-HHHHHHHHHHHHHHHHHHHHHHHHH-HSTTH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC------HHHHHHHHHHHHHH
T ss_conf 998999999999999999999944-966-7999999999999999999998888-76144------15899999999999
Q ss_pred HHHCC
Q ss_conf 99788
Q gi|254780845|r 304 CHQIG 308 (352)
Q Consensus 304 L~~lG 308 (352)
.+.||
T Consensus 318 ~~~~g 322 (322)
T 2inc_B 318 RQMMG 322 (322)
T ss_dssp HHTTC
T ss_pred HHHCC
T ss_conf 98549
No 25
>3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like fold, structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP}
Probab=96.52 E-value=0.045 Score=31.87 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999998643333455666401330577999999999999997789999999971464699999997200189
Q gi|254780845|r 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 (352)
Q Consensus 77 ~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~ 156 (352)
.-+..+...|+.++.++......+.. -....|..|.+.-++..+..|.-|.+.....+..+|-++.+....++.
T Consensus 11 ~~~~~~~~ll~~lA~~el~~~~Rlae-~~~~AP~Le~~iala~~A~de~gh~~~l~~~l~~lg~d~~~~~~~fr~----- 84 (225)
T 3ez0_A 11 RYNRFVADLFGMMAYGELSAFERFSA-DARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQA----- 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGGHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC-----
T ss_conf 69999999999999999999999998-886399878899999999999999999999999869996789887446-----
Q ss_pred HHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87788999997401210102677740149999999974000144411478899899-75980128999999985666669
Q gi|254780845|r 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLHL 235 (352)
Q Consensus 157 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE~lH~ 235 (352)
.... +...+ .+..+...++- .+++.+++..++-. .++.-+.++.++.-|.+|+. |.
T Consensus 85 ~~d~----~~~~~-----------~~~dW~e~lvr-------~yv~d~~~~df~~~la~~~d~~~a~~~~kvl~e~~-h~ 141 (225)
T 3ez0_A 85 AVDY----FHSRT-----------RPADWYESLMK-------AYVIDTVSADFYRAISRYVDAGTRDVIEQIQASDE-TT 141 (225)
T ss_dssp HHHH----HHHTC-----------CCSSHHHHHHH-------HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHSCCHH-HH
T ss_pred HHHH----HHHHC-----------CCCCHHHHHHH-------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH-HH
T ss_conf 5999----98818-----------99977999999-------99999999999999881588789999999973004-89
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH--HH----HHHHCCCCCCCCCHHHHHH---HHHHHHHHHHHH
Q ss_conf 99999999765537542206789999999999998768--86----8875188847999899999---999999999997
Q gi|254780845|r 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI--AY----AHETMPKGFVGLNAPSCEQ---YMQFIANRRCHQ 306 (352)
Q Consensus 236 ~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~--~~----~~~~~~~~~~Gl~~~~~~~---yi~y~an~rL~~ 306 (352)
.|+..-++..+..+|.+- .....|.+.+.-++...=- .. ...++..+..+-+...+.. -+.-.-.+|+..
T Consensus 142 ~~~~~~l~~~i~~d~~~~-~rlalw~RRl~geal~~~~~v~~~~~~l~~l~~~~~~~~~~~~l~~~~~~l~~~H~~RM~~ 220 (225)
T 3ez0_A 142 EVLRERLRSALADDPRLA-SRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSGLIAGLAEKHSKRMTQ 220 (225)
T ss_dssp HHHHHHHHHHHHHCTTHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999985585778-8999999988999999857523465578988721456677888999999999999999998
Q ss_pred CCCC
Q ss_conf 8879
Q gi|254780845|r 307 IGLE 310 (352)
Q Consensus 307 lG~~ 310 (352)
||+-
T Consensus 221 LGLt 224 (225)
T 3ez0_A 221 LGLT 224 (225)
T ss_dssp TTCC
T ss_pred CCCC
T ss_conf 1889
No 26
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Probab=95.31 E-value=0.15 Score=28.34 Aligned_cols=207 Identities=15% Similarity=0.150 Sum_probs=104.9
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHHHHHH----HHHHHCCHHCCCHHHHHHHHHHHHH
Q ss_conf 798703674798998520268998999999999-----9999864333345----5666401330577999999999999
Q gi|254780845|r 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-----LGFFASSESLVAN----NIVLAIYRHLSNPECRQYLLRQAFE 123 (352)
Q Consensus 53 fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~-----l~~~~~~D~~v~~----~~~~~i~~~~~~~E~~~~l~~q~~~ 123 (352)
-|-++=+|+-.+ ..|+. |+++.|..+..- +..-...|+.+.. .+.....+..-.+.++.........
T Consensus 60 dyP~~lvPf~~h-p~~~~---l~~e~R~rll~~~~~~~~~~~i~~E~~iv~pa~~~i~~~~~~~~~~~~~~~~a~~~lvD 135 (336)
T 3chh_A 60 DYPLEIVPFAEH-PLFLA---AEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVD 135 (336)
T ss_dssp SSCGGGCTTTTC-HHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCC-HHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 899665775679-77774---79999999999999999988999999999999999860547888878999999999999
Q ss_pred HHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf 997789999999971----4646999999972001898778899999740121010267774014999999997400014
Q gi|254780845|r 124 EAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 (352)
Q Consensus 124 E~iH~~sYs~il~~l----~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi 199 (352)
|+-|+......++-. |..+. .-.|...- ....-..+. .....-......+++.++.|.+
T Consensus 136 EayHtlm~~~~~~~~~~~rgi~p~------~~~P~~~~----~r~l~~~la-------~~~~~~~~~l~~la~~~V~E~~ 198 (336)
T 3chh_A 136 ESFHTYMHMLAIDRTRELRKISER------PPQPELVT----YRRLRRVLA-------DMPEQWERDIAVLVWGAVAETC 198 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCC------CCCCCCHH----HHHHHHHHT-------TCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHH----HHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998389977------78961378----988999986-------2642145679999999998789
Q ss_pred HHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHH
Q ss_conf 44114788998997-59801289999999856666699999999976553754220678999999999999----87688
Q gi|254780845|r 200 WFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT----LLEIA 274 (352)
Q Consensus 200 ~Fys~Fa~~~~l~~-~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eav----e~E~~ 274 (352)
.- ...-.+.+ .+.=|-+..+++.-.+||..|+.|+..+++.....-+.. -...+...+-.++ ..+.-
T Consensus 199 I~----~~l~~~~~D~~iqP~~r~v~~iHv~DEARHisfa~e~l~~~~~~l~~~----~R~~~~~~l~~~l~~f~~~d~~ 270 (336)
T 3chh_A 199 IN----ALLALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQ----QRRALVRCLPIALEAFAEQDLS 270 (336)
T ss_dssp BC----HHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHHCCCTH
T ss_pred HH----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99----999985369986818999999999999889999999999999869999----9999999999999999850335
Q ss_pred HHHHHCCCCCCCCCHH
Q ss_conf 6887518884799989
Q gi|254780845|r 275 YAHETMPKGFVGLNAP 290 (352)
Q Consensus 275 ~~~~~~~~~~~Gl~~~ 290 (352)
.-..++. .+|++..
T Consensus 271 ~~~~v~~--~~Gip~~ 284 (336)
T 3chh_A 271 ALLLELN--AAGIRGA 284 (336)
T ss_dssp HHHHHHH--HHTCTTH
T ss_pred CCHHHHH--HCCCCHH
T ss_conf 6499998--8699879
No 27
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=92.35 E-value=0.2 Score=27.41 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999864333345566640133057799999999999999778999999997146469999999720018987788
Q gi|254780845|r 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 (352)
Q Consensus 82 ~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~ 161 (352)
+..+|..-...+..-...+ ..+...+++|+++..+...+-+|..|.+.+..+++.++.++... .+.......
T Consensus 21 ~~e~L~~Ai~~E~~a~~~Y-~~~a~~~~~~~~k~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~------~~~~~~~~~- 92 (175)
T 2fzf_A 21 LEELLGMAIKAEIGAREFY-KSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVV------FPKEHIGPE- 92 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCC------CCSCCBSCC-
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CHHHHHHHH-
T ss_conf 9999999999899999999-99998879978999999999999999999999999737986632------024321034-
Q ss_pred HHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997401210102677740149999999974000--144411478899899759801289999999856666699999
Q gi|254780845|r 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE--GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lE--Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~ 239 (352)
............. ...++-.++-.| ++.||. .+...-.=+.+..+++.|+.||..|.....
T Consensus 93 ----------~~~~~~~~~~~~~-~~~~L~~ai~~E~~a~~~Y~------~la~~~~d~~~~~~~~~i~~eE~~H~~~l~ 155 (175)
T 2fzf_A 93 ----------LQPVARELEKVQD-IIDLIRWAMKAEEIAAEFYL------KLEEMVKEEEKKRLMRYLADMERGHYYTLR 155 (175)
T ss_dssp ----------CCCCCSCCCSHHH-HHHHHHHHHHHHHHHHHHHH------HHHHTSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------4677775025678-99999999999999999999------998858999999999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99997655
Q gi|254780845|r 240 DVINQIKI 247 (352)
Q Consensus 240 ~l~~~l~~ 247 (352)
.++..+..
T Consensus 156 ~~~e~i~~ 163 (175)
T 2fzf_A 156 AEYELLLN 163 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
T ss_conf 99998857
No 28
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein TM1526; structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1
Probab=91.87 E-value=0.49 Score=24.75 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999864333345566640133057799999999999999778999999997146469999999720018987788
Q gi|254780845|r 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 (352)
Q Consensus 82 ~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~ 161 (352)
++-+|.....++......+. .+...+ .|+++.++...+-+|.-|.+.+..++..++.++... .....+......
T Consensus 15 ~~e~l~~Ai~~E~~~~~~Y~-~~a~~~-~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 88 (157)
T 1vjx_A 15 VSDILTVAIRLEEEGERFYR-ELSEHF-NGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDS--YLAGYAFYEVFP-- 88 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHTTSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTC--BCCSBCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHH--
T ss_conf 99999999999999999999-999767-899999999999999999999999998617985427--777764222367--
Q ss_pred HHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999740121010267774014999999997400014441147889989975980128999999985666669999999
Q gi|254780845|r 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l 241 (352)
...........+....+...+. .-..++-||..+ ...-.=|.+.+++..|+.||..|......+
T Consensus 89 --------~~~~~~~~~~~~~~~~l~~ai~--~E~~a~~~Y~~l------~~~~~d~~~r~~~~~l~~eE~~H~~~l~~l 152 (157)
T 1vjx_A 89 --------DTSEILRRKDLTLKEVLDIAIS--VEKDSIILYYEL------KDGLVNSDAQKTVKKIIDQEKEHLRKLLEM 152 (157)
T ss_dssp --------CCTTGGGCSCCCHHHHHHHHHH--HHHHHHHHHHHH------HHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHCCCCCCHHHHHHHHHH--HHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------7777751478889999999998--388899999999------987799999999999999999999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780845|r 242 IN 243 (352)
Q Consensus 242 ~~ 243 (352)
.+
T Consensus 153 ~~ 154 (157)
T 1vjx_A 153 KR 154 (157)
T ss_dssp HH
T ss_pred HH
T ss_conf 87
No 29
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=87.94 E-value=1.2 Score=22.08 Aligned_cols=217 Identities=10% Similarity=0.038 Sum_probs=109.0
Q ss_pred CCCCCHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCCH-
Q ss_conf 786167999-9999999457987036747989985202689989999999999-9998643333455666401330577-
Q gi|254780845|r 35 LPLKYGWAW-EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL-GFFASSESLVANNIVLAIYRHLSNP- 111 (352)
Q Consensus 35 ~p~kY~~~~-~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l-~~~~~~D~~v~~~~~~~i~~~~~~~- 111 (352)
.|-.+|.+. .+++......=.-.+-||-+.+.+ +.|+.+.-..|..-- -++... .+.+. .+...++.+
T Consensus 14 ~~~~~p~~~~~L~~~~~~~~~~i~~HPF~~~l~~----G~L~~e~f~~yl~Qdy~yl~~f----~r~la-~~~a~~~~~~ 84 (262)
T 3oql_A 14 EASSYPAWAQQLINDCSPAKARVVEHELYQQMRD----AKLSPQIMRQYLIGGWPVVEQF----AVYMA-KNLTKTRFGR 84 (262)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTCHHHHHHHT----TCSCHHHHHHHHHHHHHHHHHH----HHHHH-HHHTTCCTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHCCCHH
T ss_conf 8777874999999987999999877919999866----9999999999999999999999----99999-9998399844
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHH
Q ss_conf -----999999999999997789999999971464699999997200189877889999974012101026777401499
Q gi|254780845|r 112 -----ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 (352)
Q Consensus 112 -----E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
..+..+..-..+|.-|.+.|...++.+|.+++++. ...--|....-.++....-.. ..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~e~~h~~l~~~~~~~lGi~~e~l~-~~~~~p~t~ay~~~l~~~a~~--------------~~~~ 149 (262)
T 3oql_A 85 HPGEDMARRWLMRNIRVELNHADYWVNWCAAHDVTLEDLH-DQRVAPELHALSHWCWQTSSS--------------DSLA 149 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTTHHHHHHHHHHTTTCCHHHHH-HTCSCGGGGHHHHHHHHHHHH--------------SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-CCCCCHHHHHHHHHHHHHHHC--------------CCHH
T ss_conf 4777999999999888874199999999998499999984-389989999999999999855--------------9999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99999974000144411478899899759------801289999999---856666699999999976553754220678
Q gi|254780845|r 187 QDLFVFYVVFEGMWFYTGFAQILSLGRAN------KMVGIAEQYQYI---MRDESLHLNFGIDVINQIKIENPHLWTKEF 257 (352)
Q Consensus 187 ~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g------~m~g~~~~i~~I---~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~ 257 (352)
..+.+...+.|++..--+ ....+.. .....-....|+ ...+-.|+.-+..++..+..+.| ++..
T Consensus 150 ~~laa~~~~~E~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~w~~~h~~~D~~h~~~~~~~l~~~~~~~~---~~~~ 222 (262)
T 3oql_A 150 VAMAATNYAIEGATGEWS----AVVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKP---SLQL 222 (262)
T ss_dssp HHHHHTTTHHHHHHHHHH----HHHHSSSHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCSSC---CHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---CHHH
T ss_conf 999999999999789999----999887776521577776378999999831207779999999999872079---9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999998768868875188
Q gi|254780845|r 258 QQKSRTMLHEATLLEIAYAHETMPK 282 (352)
Q Consensus 258 ~~~i~~~~~eave~E~~~~~~~~~~ 282 (352)
.+++.+.+..+++.|..|.+.++..
T Consensus 223 ~~~~~~a~~~s~~~e~~f~D~~y~~ 247 (262)
T 3oql_A 223 QAELRQAVTKSYDYMYLFLERCIQL 247 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999997
No 30
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase, toxin; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=85.89 E-value=1.6 Score=21.33 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=90.7
Q ss_pred HCCHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf 4013305779999999999999----977899999999714646999999972001898778899999740121010267
Q gi|254780845|r 103 AIYRHLSNPECRQYLLRQAFEE----AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 (352)
Q Consensus 103 ~i~~~~~~~E~~~~l~~q~~~E----~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~ 178 (352)
.+...++.++.+..+......| .-|...+...++.+|.+++++ ....-.|....-.++..... ..
T Consensus 60 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~h~~l~~~~~~~~g~~~~~i-~~~~~~p~~~~~~~~~~~~~---~~------- 128 (231)
T 1rcw_A 60 AIHSRCDDLEARKLLLDNLMDEENGYPNHIDLWKQFVFALGVTPEEL-EAHEPSEAAKAKVATFMRWC---TG------- 128 (231)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHTTCCHHHH-HHCCCCHHHHHHHHHHHHHH---TS-------
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH-HHCCCHHHHHHHHHHHHHHH---CC-------
T ss_conf 99770997167899999999986233527999999888746999998-40242168899999999998---13-------
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 77401499999999740001444114788998997-5980--12899999998566666999999999765537542206
Q gi|254780845|r 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKM--VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 (352)
Q Consensus 179 ~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~-~g~m--~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~ 255 (352)
.. ...++++...+|.+.-..+=...-.+.+ .|.. .++.---..+.-|+ -|......++..+..|
T Consensus 129 -~~----~~~~~a~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~h~~~D~-~H~~~~~~l~~~~~~e------- 195 (231)
T 1rcw_A 129 -DS----LAAGVAALYSYESQIPRIAREKIRGLTEYFGFSNPEDYAYFTEHEEADV-RHAREEKALIEMLLKD------- 195 (231)
T ss_dssp -SC----HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSCCCSGGGGHHHHHHHHHHH-HHHHHHHHHHHHHCSS-------
T ss_pred -CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHH-------
T ss_conf -25----9999999999999999999999987775279985678899899999989-9999999999877999-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7899999999999987688688751888
Q gi|254780845|r 256 EFQQKSRTMLHEATLLEIAYAHETMPKG 283 (352)
Q Consensus 256 ~~~~~i~~~~~eave~E~~~~~~~~~~~ 283 (352)
..+++.+.+..+.++|..|-+.++..+
T Consensus 196 -~~~~~~~~~~~~~~~~~~f~d~~y~~~ 222 (231)
T 1rcw_A 196 -DADKVLEASQEVTQSLYGFLDSFLDPG 222 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -999999999999999999999866767
No 31
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=80.22 E-value=2.6 Score=19.84 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHHHHHCCHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf 333455666401330577-99999999999999778999999997146469999999720018987788999997401--
Q gi|254780845|r 94 SLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-- 170 (352)
Q Consensus 94 ~~v~~~~~~~i~~~~~~~-E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~-- 170 (352)
+.+.+.+.+.+. +..+ ..+.++...+.+|.-|-+..+.++.-|......--+....+|.+..-..-....+....
T Consensus 37 sa~mqYl~Q~~~--~~~~~k~kdlL~dIatEEl~HlEmlat~I~~L~~~~~~~~e~~~~d~~~~~~~~g~~p~~~~~~g~ 114 (266)
T 1o9i_A 37 TGMMSFLSQGWA--STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGL 114 (266)
T ss_dssp HHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHHHHHSCHHHHHTTSS
T ss_pred HHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 999999999853--588289999999999999899999999999981699877434011303566644899622444257
Q ss_pred -----CCH---HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----210---1026777401499999999740001444114788998--997598012899999998566666999999
Q gi|254780845|r 171 -----SPS---FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS--LGRANKMVGIAEQYQYIMRDESLHLNFGID 240 (352)
Q Consensus 171 -----~~~---~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~--l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~ 240 (352)
++. +.-......-. +...+..++..|. . |...+ +-+.=.=|++.+++.+++.||..|..-...
T Consensus 115 g~~~~ds~G~pWt~~yv~~sgd-l~aDL~~niaaE~-----~-Ar~~Y~rl~~~tdDp~vkd~L~fL~~RE~~H~~~f~~ 187 (266)
T 1o9i_A 115 NASLNNPNGAAWNAGYVTSSGN-LVADMRFNVVRES-----E-ARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMK 187 (266)
T ss_dssp CCCSBCTTCCBCBGGGCCCCSC-HHHHHHHHHHHHH-----H-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEECCC-HHHHHHHHHHHHH-----H-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6664478999877770120788-9999999999999-----9-9999999998528922899999999976999999999
Q ss_pred HHHHHHH
Q ss_conf 9997655
Q gi|254780845|r 241 VINQIKI 247 (352)
Q Consensus 241 l~~~l~~ 247 (352)
.+..+..
T Consensus 188 ALe~l~~ 194 (266)
T 1o9i_A 188 AQEELEE 194 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999742
No 32
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=79.27 E-value=2.7 Score=19.64 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHH-HH-HHHHHHH-HHH-HHHHHHHHHH-----CCC---HHHCC
Q ss_conf 7999999999999997789999999971-464699999-99-7200189-877-8899999740-----121---01026
Q gi|254780845|r 111 PECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFN-MY-REVPSIT-AKA-NWALQYTQTL-----SSP---SFTTG 177 (352)
Q Consensus 111 ~E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~-~~-~~~~~i~-~k~-~~~~~~~~~~-----~~~---~~~~~ 177 (352)
+..+.++...+.+|.-|-+..+.++.-| +-.+.+.-+ .. ...+.+. .+. .....+...- .+. .+.-.
T Consensus 57 ~~~~dlL~dIatEEl~HlEmlat~I~~Ll~~~p~~~~~~~~d~~~~~~~~~~~~~n~~h~i~~g~g~~p~ds~G~pWt~~ 136 (302)
T 2v8t_A 57 KPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPASTPLGFAKDVRNAAHFIAGGANSLVMGAMGEHWNGE 136 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCCCCCCCCGGGCTTGGGGGSSCSHHHHTSSSCCCSBCTTSCBCBGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 05999999999999999999999999996589757888501410125565204788412320488887568889968676
Q ss_pred CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 777401499999999740001444114788998--9975980128999999985666669999999997655
Q gi|254780845|r 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS--LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352)
Q Consensus 178 ~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~--l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352)
.....-... ..+..++..|. . |.+.+ +-+.=.=|++.+++.+++.+|..|..-....+..+..
T Consensus 137 YV~~sGnl~-aDL~~NiaaE~-----~-Ar~~y~rl~~~tdDp~vkd~L~fLi~RE~~H~~~f~~ALe~l~~ 201 (302)
T 2v8t_A 137 YVFTSGNLI-LDLLHNFFLEV-----A-ARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTG 201 (302)
T ss_dssp GCCCCSCHH-HHHHHHHHHHH-----H-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHH-HHHHHHHHHHH-----H-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 131589899-99999999999-----9-99999999986388149999999999789999999999999757
No 33
>3dde_A TENA/THI-4 protein, domain of unknown function with A heme oxygenase-like fold; YP_564736.1, structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=70.81 E-value=4.4 Score=18.20 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3674798998520268998999999999999986433334556664013305--77999999999999997789999999
Q gi|254780845|r 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAFEEAVHSHTFQYII 135 (352)
Q Consensus 58 Ei~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~--~~E~~~~l~~q~~~E~iH~~sYs~il 135 (352)
.-|+-+... + +.|+++.-..+....-.+... -.+.+. .....++ ....+..+.....+|.-|-+.+...+
T Consensus 24 ~~Pf~~~l~---~-G~l~~~~~~~~l~q~y~~v~~---~~~~la-~~~~~~~~~~~~~~~~~~~~~~eE~~H~~~~~~~l 95 (239)
T 3dde_A 24 NSPFIHEVL---D-GKATKALYAIYMTETYHYTKH---NAKNQA-LVGIMGKDLPGKYLSFCFHHAHEEAGHELMALSDI 95 (239)
T ss_dssp HCHHHHHHH---T-TCCCHHHHHHHHHHHHHHHTT---HHHHHH-HHHHHCSSCCHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred CCHHHHHHH---C-CCCCHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 598999986---7-999999999999999899999---999999-99887202202589998765130133999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf 97146469999999720018987788999997401210102677740149999999974000144411478899899759
Q gi|254780845|r 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 (352)
Q Consensus 136 ~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g 215 (352)
+.+|.+++++ ....-.|..+.-++++...... .+.. .++++..++||..-..+ ...-...++.
T Consensus 96 ~alG~~~~~v-~~~~p~p~t~a~~~~l~~~~~~-----------~~~~----~~~a~~~~~E~~~~~~~-~~~~~~~~~~ 158 (239)
T 3dde_A 96 ASIGFDREDV-LSSKPLPATETLIAYLYWISAT-----------GNPV----QRLGYSYWAENVYGYID-PVLKAIQSTL 158 (239)
T ss_dssp HHTTCCHHHH-HTCCCCHHHHHHHHHHHHHHHS-----------SCGG----GGHHHHHHHHTCHHHHH-HHHHHHHHHT
T ss_pred HHHCCCHHHH-HCCCCCHHHHHHHHHHHHHHHC-----------CCHH----HHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_conf 9829798998-6379988999999999999874-----------9989----99999999997108899-9999999865
Q ss_pred CCCHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8012899-999-998566666999999999765537542206789999999999998768868875188
Q gi|254780845|r 216 KMVGIAE-QYQ-YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 (352)
Q Consensus 216 ~m~g~~~-~i~-~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~ 282 (352)
.++.-+- .+. .+.-| .-|+.....++..+.. +++..+.+.+.+..++.++..+-+.++..
T Consensus 159 ~~~~~~~~~~~~h~~~d-~~H~~~~~~ll~~~~~------s~e~~~~~~~~~~~~~~l~~~~fd~~~~~ 220 (239)
T 3dde_A 159 DLTPQSMKFFIAHSKID-AKHAEEVNEMLHEVCK------TQEDVDSVVAVMENSLVLTARILDDVWKE 220 (239)
T ss_dssp TCCGGGGHHHHHHHHHH-HHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCHHHCCHHHH-HHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98864510211008751-8999999999987029------99999999999999999999999999997
No 34
>3hl1_A Ferritin like protein; NP_419375.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=63.79 E-value=6.1 Score=17.27 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999864333345566640133057799999999999999778999999997146
Q gi|254780845|r 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (352)
Q Consensus 83 ~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~ 140 (352)
..+--+++++=|+.. ++.|+...+...+.+|++|--.=++|+.++|-
T Consensus 24 aTIPpYLtA~ySIk~-----------~~~~a~~lI~sVa~EEMlHm~laaNiLnAiGG 70 (317)
T 3hl1_A 24 WTIPYYLTVLYSIKD-----------PTTVPYRLIQAAVYQEMLHAQLVSNIANAYGY 70 (317)
T ss_dssp HHHHHHHHHHHHBSC-----------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999998853777-----------62689999999999999999999999998089
No 35
>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A
Probab=63.11 E-value=6.2 Score=17.19 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=71.1
Q ss_pred HHHHH-HHHHHHH-HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86433-3345566-640133057799999999999999778999999997146469999999720018987788999997
Q gi|254780845|r 90 ASSES-LVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 (352)
Q Consensus 90 ~~~D~-~v~~~~~-~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~ 167 (352)
-.+++ .+.+... ..+...-.-|++...+...+..|..|++.+...+..++.++..+-.+..
T Consensus 16 fagEs~A~~rY~~~A~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~~~~t~~nL~~a~~----------------- 78 (171)
T 1nnq_A 16 FAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIE----------------- 78 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-----------------
T ss_conf 987999999999999999887859999999999999999999999997542686678999998-----------------
Q ss_pred HHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40121010267774014999999997400014441147889989975980128999999985666669999999997655
Q gi|254780845|r 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352)
.--.|..-.|..|+-.. +.-.....+..+..|+++|..|......++..+..
T Consensus 79 -------------------------~e~~E~~~~Yp~~a~~A---~eeG~~~~a~~f~~i~~~E~~H~~~~~~~l~~l~~ 130 (171)
T 1nnq_A 79 -------------------------GETFEVEEMYPVYNKAA---EFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK 130 (171)
T ss_dssp -------------------------HHHHHHHTHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------HHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------------------11788998899999999---98687999999999999999999999999987551
Q ss_pred H
Q ss_conf 3
Q gi|254780845|r 248 E 248 (352)
Q Consensus 248 E 248 (352)
.
T Consensus 131 ~ 131 (171)
T 1nnq_A 131 G 131 (171)
T ss_dssp T
T ss_pred C
T ss_conf 2
No 36
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=58.15 E-value=7.5 Score=16.62 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=67.9
Q ss_pred HCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
Q ss_conf 40133057799999999999999778999999997146469999999720018987788999997401210102677740
Q gi|254780845|r 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 (352)
Q Consensus 103 ~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~ 182 (352)
.+.+.-.-|++..++..++..|..|+.....++.-++..+. .+.+.. + ......
T Consensus 52 ~~A~~eG~~~iA~~F~~~A~eE~~HA~~~~~~i~~l~g~~~--------~~~~~~--------------~----~~~~t~ 105 (202)
T 1yuz_A 52 KAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE--------KPTVAA--------------P----SAYSCD 105 (202)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC--------CCCC----------------C----CCCCHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCCCCC--------------C----CCCCHH
T ss_conf 99988588999999999999999999999999872157765--------555467--------------7----777689
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14999999997400014441147889989975980128999999985666669999999997655
Q gi|254780845|r 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352)
Q Consensus 183 ~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352)
.. +...+. .--.|.+-.|..|+-.. +.-...++++.+..|+.||..|......++..+..
T Consensus 106 ~n-L~~a~~-~E~~Ea~~~Y~~~a~~A---~~eGd~~~a~~f~~i~~~E~~H~~~f~~~le~l~~ 165 (202)
T 1yuz_A 106 LN-LISGAN-GEIYETSDMYPAFIRKA---QEEGNSKAVHVFTRAKLAESVHAERYLAAYNDIDA 165 (202)
T ss_dssp HH-HHHHHH-HHHHHHHTHHHHHHHHH---HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HH-HHHHHH-HHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99-999999-77999999999999999---98698999999999999999999999999998737
No 37
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} SCOP: a.25.1.5 PDB: 3k6c_A
Probab=57.12 E-value=7.8 Score=16.51 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971
Q gi|254780845|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 (352)
Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l 138 (352)
|++.-+++..-+.+.-+- +.+.++-......+++|+++.++.-..-+|-.|.-.+-.++.-+
T Consensus 13 L~~e~~d~~rai~sl~~E---leAI~~Y~Q~a~~~~d~e~k~vl~hi~~EEk~H~g~~lelLrr~ 74 (95)
T 1zpy_A 13 LSDETRDMHRAIISLREE---LEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp SCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 198789999999999999---99999999999868999999999999999999999999999987
No 38
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, structural genomics; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum ms-1} SCOP: a.25.1.8
Probab=56.23 E-value=8.1 Score=16.41 Aligned_cols=120 Identities=11% Similarity=-0.045 Sum_probs=68.2
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHH
Q ss_conf 33057799999999999999778999999997146469999999720018987788999997401210102677740149
Q gi|254780845|r 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 (352)
Q Consensus 106 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352)
+...+|+++.++...+.+|..|.+....++..++.++... .+..... .... ..........+....
T Consensus 32 ~~~~~~~~~~~f~~lA~eE~~H~~~l~~~~~~~~~~~~~~------~~~~~~~-------~~~~-~~~~~~~~~~~~~~~ 97 (167)
T 2oh3_A 32 EAHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMS------WQYRWKT-------PPEV-GDENDIHYLMTPYHA 97 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCG------GGTSCCC-------CCCS-SCC---CGGGSHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH------HHHHHCC-------CHHH-HHHHHCCCCCCHHHH
T ss_conf 6568699999999999999999999999987445886403------6664034-------1123-223321134799999
Q ss_pred HHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999974000--1444114788998997598012899999998566666999999999765537
Q gi|254780845|r 186 LQDLFVFYVVFE--GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 (352)
Q Consensus 186 ~~~~i~~~~~lE--Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~ 249 (352)
+ .+.+-.| ++-||.. +..+-.=+.+.+++..+++||..|......+++.+....
T Consensus 98 L----~~A~~~E~~a~~~Y~~------la~~~~d~~~~~~~~~l~~~E~~H~~~l~~~l~~~~~~~ 153 (167)
T 2oh3_A 98 L----RYARDNEIRGMEYYKE------AAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS 153 (167)
T ss_dssp H----HHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred H----HHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9----9999999999999999------998869999999999999999999999999998658999
No 39
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli K12} SCOP: a.25.1.2
Probab=50.21 E-value=10 Score=15.77 Aligned_cols=183 Identities=10% Similarity=0.078 Sum_probs=102.2
Q ss_pred HHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3334556664013305779999999999999977899999999714-646999999972001898778899999740121
Q gi|254780845|r 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG-LDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 (352)
Q Consensus 94 ~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~ 172 (352)
-+.+..+. ..+...|..|....++..+-.|.=|++.+-.+...++ ..+++-+. +...+.-. | +.
T Consensus 17 lil~~R~s-eW~~~aP~LEediAlanialD~lGhAr~ly~~a~el~g~~~eD~La-~~R~~~~f-r------------n~ 81 (249)
T 1otk_A 17 LVLSQRLG-EWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLA-FTRDERQF-S------------NL 81 (249)
T ss_dssp HHHHHHHH-TTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHH-HSCCGGGC-C------------CC
T ss_pred HHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HCCCHHHH-H------------HH
T ss_conf 99999885-7984399769999999999999879999999999857999789997-51163465-3------------01
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0102677740149999999974000144411478899899-759801289999999856666699999999976553754
Q gi|254780845|r 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~ 251 (352)
. ...-+...+...++ -.+||..|..++.=. .+..-+-++.+...+++.|..|..++..-+..+...
T Consensus 82 ~---l~e~P~gdwa~ti~-------r~fl~d~~~~~~l~~L~~ss~~pLa~ia~K~~kEe~yH~~h~~~Wv~rLg~g--- 148 (249)
T 1otk_A 82 L---LVEQPNGNFADTIA-------RQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNG--- 148 (249)
T ss_dssp G---GGGSCCCSHHHHHH-------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred H---HHCCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_conf 9---98089887999999-------9999999999999999818887899999999999999999999999999856---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 220678999999999999876886887518884---------79998999999999999999978879
Q gi|254780845|r 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF---------VGLNAPSCEQYMQFIANRRCHQIGLE 310 (352)
Q Consensus 252 l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~---------~Gl~~~~~~~yi~y~an~rL~~lG~~ 310 (352)
|++..+++.+ |++.=-.|+-.+|+.+. ++.+.+.+.+=-.-.....|...|++
T Consensus 149 --t~Esr~rmq~----Al~~lwp~~~elF~~~~~~~~l~~~gi~~~~~~Lr~~w~~~v~~vl~~a~L~ 210 (249)
T 1otk_A 149 --TDVSGQKMQQ----AINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN 210 (249)
T ss_dssp --CHHHHHHHHH----HHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHHHHHHHHHHTTCC
T ss_pred --CHHHHHHHHH----HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf --9999999999----9999999988874788068999877877998999999999999999981899
No 40
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli}
Probab=47.54 E-value=11 Score=15.50 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.0
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9759801289999999856666699
Q gi|254780845|r 212 GRANKMVGIAEQYQYIMRDESLHLN 236 (352)
Q Consensus 212 ~~~g~m~g~~~~i~~I~RDE~lH~~ 236 (352)
.++|.-..++..++.|..||.+|+.
T Consensus 85 skqgnaeqfaslvqqilqdeqrhve 109 (115)
T 2hz8_A 85 SKQGNAEQFASLVQQILQDEQRHVE 109 (115)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7457799999999999998898899
No 41
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A
Probab=41.66 E-value=13 Score=14.90 Aligned_cols=27 Identities=22% Similarity=0.010 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 012899999998566666999999999
Q gi|254780845|r 217 MVGIAEQYQYIMRDESLHLNFGIDVIN 243 (352)
Q Consensus 217 m~g~~~~i~~I~RDE~lH~~f~~~l~~ 243 (352)
++|+++-+.--+.+|.-|..-...-+.
T Consensus 35 ~~g~a~~f~~~a~EE~~HA~~l~~yi~ 61 (168)
T 3e6s_A 35 WEGMAAYMLAESAEEREHGLGFVDFAN 61 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 288999999998999999999999999
No 42
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=40.70 E-value=14 Score=14.80 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 7799999999999999
Q gi|254780845|r 110 NPECRQYLLRQAFEEA 125 (352)
Q Consensus 110 ~~E~~~~l~~q~~~E~ 125 (352)
.+++...+..|+.+|-
T Consensus 17 s~~v~~~LN~qi~~El 32 (176)
T 1vlg_A 17 SEKVRKALNDQLNREI 32 (176)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 6999999999999999
No 43
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=38.14 E-value=15 Score=14.54 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8998999999999999986433334556664013305---7799999999999999778999999997146469999999
Q gi|254780845|r 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS---NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 (352)
Q Consensus 73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~---~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~ 149 (352)
.|+.+.+.++..+-..++ ++......+ .....++. -+++..++..++.+|..|+......+..+|-.|.-
T Consensus 3 ~m~~~~~~li~~Ln~~l~-~E~~a~~~Y-~~~a~~~~~~~~~~~~~~f~~~a~eE~~Ha~~l~~~i~~lGg~p~~----- 75 (149)
T 2qqy_A 3 AMSHDVKELIEGLNEDLA-GEYSAIIMY-NHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTT----- 75 (149)
T ss_dssp -CCHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-----
T ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----
T ss_conf 552369999999999999-999999999-9999988079889999999999999999999999999874998776-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 72001898778899999740121010267774014999999997400014441147889989975980128999999985
Q gi|254780845|r 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 (352)
Q Consensus 150 ~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~R 229 (352)
.|. ......+....+...+.. =.+.+-.|..+ ...++...-+++++.+..|+.
T Consensus 76 --~~~--------------------~~~~~~~~~e~L~~al~~--E~~~~~~y~~~---~~~a~~~~D~~~~~~l~~~~~ 128 (149)
T 2qqy_A 76 --IPL--------------------RVKQAEDVREMLEYARQS--EYETIKRYEKR---KEQAANLNMTELVVKLEDMIA 128 (149)
T ss_dssp --CCC--------------------CCCCCSSHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCC--------------------CHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHH
T ss_conf --753--------------------101125689999999999--99999999999---999988698999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 666669999999997
Q gi|254780845|r 230 DESLHLNFGIDVINQ 244 (352)
Q Consensus 230 DE~lH~~f~~~l~~~ 244 (352)
||..|......+++.
T Consensus 129 eE~~H~~~l~~~L~~ 143 (149)
T 2qqy_A 129 DETNHMEELDRLLND 143 (149)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998563
No 44
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=35.65 E-value=17 Score=14.28 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 674798998520268998999999999999986
Q gi|254780845|r 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 (352)
Q Consensus 59 i~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~ 91 (352)
++=..++..+.+...||+.|+.++......+..
T Consensus 7 ~~~~~~~~~~~~~~~LT~~e~~~I~~SW~~v~~ 39 (193)
T 2dc3_A 7 VPGEMEIERRERSEELSEAERKAVQAMWARLYA 39 (193)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 478776544567799999999999999999975
No 45
>3bvf_A Ferritin; iron storage, cytoplasm, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=35.50 E-value=17 Score=14.26 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889989975980128999999985666669999999997655
Q gi|254780845|r 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352)
Q Consensus 206 a~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352)
.-+..++...+=+.+...++++..++.-|..-...++..+..
T Consensus 116 ~~l~~~A~~~~D~~t~~fl~~fl~eQ~e~~~~l~~~l~~l~~ 157 (181)
T 3bvf_A 116 NNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLFKDILDKIEL 157 (181)
T ss_dssp HHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999988799849999999999999999999999999987
No 46
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii OT3} SCOP: a.132.1.3
Probab=35.30 E-value=17 Score=14.24 Aligned_cols=190 Identities=10% Similarity=0.006 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 74798998520268998999999999999986433334556664013305779999999999999977899999999714
Q gi|254780845|r 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 (352)
Q Consensus 60 ~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~ 139 (352)
||-+...+ +.|+++.-..+..-=..+...-. +.+ .......+.++...++.........+.+.+..+++.+|
T Consensus 24 PFv~~l~~----GtL~~e~f~~yl~QD~~yl~~~~---r~~-a~~~aka~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g 95 (226)
T 1udd_A 24 PFVVQLYS----GTLPLEKFKFYVLQDFNYLVGLT---RAL-AVISSKAEYPLMAELIELARDEVTVEVENYVKLLKELD 95 (226)
T ss_dssp HHHHHHHH----TCSCHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHSCTTHHHHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHH---HHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999765----99999999999999999999999---999-99976388299999999999999999999999999849
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 64699999997200189877889999974012101026777401499999999740001444114788998997598012
Q gi|254780845|r 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 (352)
Q Consensus 140 ~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g 219 (352)
.+.+++ ....-.|....-.+++...-.. ..+...+ ++...+|-++...+= ......+.-++
T Consensus 96 i~~~~~-~~~~~~p~~~~y~~~l~~~a~~--------------~~~~~~l-~al~pc~~~Y~~i~~---~~~~~~~~~~~ 156 (226)
T 1udd_A 96 LTLEDA-IKTEPTLVNSAYMDFMLATAYK--------------GNIIEGL-TALLPCFWSYAEIAE---YHKDKLRDNPI 156 (226)
T ss_dssp CCHHHH-HHSCCCHHHHHHHHHHHHHHHH--------------SCHHHHH-HHHHHHHHHHHHHHH---HTHHHHTTCSC
T ss_pred CCHHHH-HCCCCCHHHHHHHHHHHHHHCC--------------CCHHHHH-HHHHHHHHHHHHHHH---HHHHHCCCCCC
T ss_conf 997775-3138655889999999998727--------------9899999-999999989999999---99874366999
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999998---56666699999999976553754220678999999999999876886887518884
Q gi|254780845|r 220 IAEQYQYIM---RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 (352)
Q Consensus 220 ~~~~i~~I~---RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~ 284 (352)
.. --.||. -|+-.+ .+..++.+..+.+ ++..+++.+++..++++|..|=+.++..|-
T Consensus 157 ~~-y~~Wi~~y~~~~~~~---~v~~l~~~~d~~~----~~~~~~~~~~F~~~~~~E~~Fwd~Ay~~~~ 216 (226)
T 1udd_A 157 KI-YREWGKVYLSNEYLN---LVGRLRKIIDSSG----HSGYDRLRRIFITGSKFELAFWEMAWRGGD 216 (226)
T ss_dssp HH-HHHHHHGGGSHHHHH---HHHHHHHHHHTSC----SSCHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CH-HHHHHHHHCCHHHHH---HHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 70-999999837989999---9999999998789----999999999999999999999999876897
No 47
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthase; structural genomics, APC5632, PSI-2, protein structure initiative; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=32.19 E-value=19 Score=13.91 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=83.7
Q ss_pred HHCCHHCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 640133057799999999999999-------7789999999971464699999997200189877889999974012101
Q gi|254780845|r 102 LAIYRHLSNPECRQYLLRQAFEEA-------VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 (352)
Q Consensus 102 ~~i~~~~~~~E~~~~l~~q~~~E~-------iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~ 174 (352)
..++..++.++.+..+..-.+.|. .|.+-|..+++.+|++++ +......|+...-.+..... ...
T Consensus 161 aai~~~~~d~~~r~~L~~nl~DE~G~g~~~~~H~~l~~rl~~alGld~d--~~a~~~lP~t~a~vn~~~~~---~~~--- 232 (332)
T 3bjd_A 161 ADLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEAD--FQAVSTMPEEIAYLNNRARA---FRH--- 232 (332)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCC--TTCCCCCHHHHHHHHHHHHH---HHC---
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC--HHHCCCCHHHHHHHHHHHHH---HCC---
T ss_conf 9986469998999999999998726887444089999999998399831--32213469999999999999---844---
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 026777401499999999740001444114788-9989975980128999999-98566666999999999765537542
Q gi|254780845|r 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ-ILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIENPHL 252 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~-~~~l~~~g~m~g~~~~i~~-I~RDE~lH~~f~~~l~~~l~~E~p~l 252 (352)
+.+... +....+.|.+ .-+.+.. .-.+.+.|.=+....=+.. |.-| ..|+.++..++...+.
T Consensus 233 --------~~~~~a-vaal~~tE~~-vP~i~~~~i~gLrr~Gl~~~~l~YF~~Hit~D-~~Ha~~~l~lV~~~~~----- 296 (332)
T 3bjd_A 233 --------AEVGWG-LAVFYITELV-VPGNHEKLYRALLQAGLSEDQAEYYKVHISLV-PPRAKREWQLIARRIP----- 296 (332)
T ss_dssp --------SSTHHH-HHHHHHHHHH-HHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHC-C---CTTHHHHHTTTT-----
T ss_pred --------CCHHHH-HHHHHHHHHH-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCC-----
T ss_conf --------758899-8899999986-30769999999998599878999999999855-7648989999987669-----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 20678999999999999876886887518
Q gi|254780845|r 253 WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 (352)
Q Consensus 253 ~~~~~~~~i~~~~~eave~E~~~~~~~~~ 281 (352)
|.+.++.+.+.+....+++-.+.+-++.
T Consensus 297 -t~e~Q~~~l~al~~~~~~~~~~lDal~~ 324 (332)
T 3bjd_A 297 -DVQFQNAFLTSLSQHFRVERAYYDAIWE 324 (332)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999999999999999999999999
No 48
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=31.40 E-value=19 Score=13.82 Aligned_cols=186 Identities=10% Similarity=0.054 Sum_probs=88.6
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCC
Q ss_conf 85202689989999999999999864333345566640133057799999999999999------778999999997146
Q gi|254780845|r 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA------VHSHTFQYIITSLGL 140 (352)
Q Consensus 67 dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~------iH~~sYs~il~~l~~ 140 (352)
.|.+ ++||.++-..+...- +-.. ....+.+ ..+...++.++.+..+..-..+|. -|.+-|-...+.+|.
T Consensus 32 ~~~~-G~lt~~~l~~~a~q~--y~~v-~~fpr~l-aai~s~~~d~~~r~~ll~nl~eeeg~~~~~~H~el~l~f~~alG~ 106 (258)
T 3hlx_A 32 AMHN-GNATREQIQGWVANR--FYYQ-TTIPLKD-AAIMANCPDAQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGL 106 (258)
T ss_dssp HHHT-TCCCHHHHHHHHHHH--HHHH-HHHHHHH-HHHHHTCCCHHHHHHHHHHHHHHHCSSSSCHHHHHHHHHHHHTTC
T ss_pred HHHC-CCCCHHHHHHHHHHH--HHHH-HHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9857-999999999999988--9999-9999999-999980998899999999999884767787479999999998099
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCCC-
Q ss_conf 46999999972001898778899999740121010267774014999999997400014441147889989975-9801-
Q gi|254780845|r 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMV- 218 (352)
Q Consensus 141 ~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~-g~m~- 218 (352)
+.+++-+.-.--|..+ .+..++..+... .. .... +++.+.|+..-..+=..+-.+.+. |...
T Consensus 107 ~~~~v~~~~~~~p~t~----~~~~~~~~~~~~----------~~-~~~~-~A~~~~E~~~p~i~~~~~~gl~~~yg~~~~ 170 (258)
T 3hlx_A 107 SRDDLLSERHVLPGVR----FAVDAYLNFARR----------AC-WQEA-ACSSLTELFAPQIHQSRLDSWPQHYPWIKE 170 (258)
T ss_dssp CHHHHHTCCSCCHHHH----HHHHHHHHHHHH----------SC-HHHH-HHGGGGGGTHHHHHHHHHHHHHHHCTTSCG
T ss_pred CHHHHCCCCCCCHHHH----HHHHHHHHHHCC----------CC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9888301456881899----999999986434----------75-9999-999999998899999999989985598886
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -28999999985666669999999997655375422067899999999999987688688751
Q gi|254780845|r 219 -GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 (352)
Q Consensus 219 -g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~ 280 (352)
++.---..+.-| .-|+..+..++..+.. +.+.++.+.+.+..+.++.-.+.+-+.
T Consensus 171 ~~l~fF~~H~~~d-~~H~e~~~~lv~~~a~------t~e~q~~~l~a~~~~~~~lw~~lDgi~ 226 (258)
T 3hlx_A 171 EGYFFFRSRLSQA-NRDVEHGLALAKAYCD------SAEKQNRMLEILQFKLDILWSMLDAMT 226 (258)
T ss_dssp GGGHHHHHHHHHH-HHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7888999988860-7889999999999859------999999999999999999999999999
No 49
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron transport, metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=30.47 E-value=20 Score=13.72 Aligned_cols=109 Identities=11% Similarity=0.008 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHH
Q ss_conf 05779999999999999977899999999714646999999972001898778899999740121010267774014999
Q gi|254780845|r 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 (352)
Q Consensus 108 ~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (352)
..-+.+..++..++.+|..|+......+..+|-.+. .+. ........+....+.
T Consensus 35 ~g~~~la~~f~~~a~eE~~HA~~l~~~i~~lGg~p~--------~~~------------------~~~~~~~~~~~~~l~ 88 (155)
T 2fkz_A 35 WGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPN--------LQE------------------LGKLLIGEHTKEMLE 88 (155)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--------CSC------------------CCCCCCCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCC------------------CCCCCCCCCHHHHHH
T ss_conf 798999999999999999999999999870698843--------233------------------345767887899999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997400014441147889989975980128999999985666669999999997655
Q gi|254780845|r 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352)
Q Consensus 188 ~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352)
..+. .-.+.+-.|..+ ...+..-.-+.+++.++++..||..|..+....+..+..
T Consensus 89 ~~l~--~E~~~~~~y~~~---~~~A~~~~D~~~~~~l~~~l~eEe~h~~~l~~~L~~i~~ 143 (155)
T 2fkz_A 89 CDLK--LEQAGLPDLKAA---IAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDK 143 (155)
T ss_dssp HHHH--HHHHHHHHHHHH---HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998--899999999999---999988699999999999999999999999999999998
No 50
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus}
Probab=29.08 E-value=9.5 Score=15.95 Aligned_cols=67 Identities=24% Similarity=0.235 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971464699
Q gi|254780845|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 (352)
Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e 144 (352)
||..| +.+.|..-..++. ...++-..+...+++++++..+...+-+|-.|+.-+..++..+.+++.+
T Consensus 15 ~~~~e---~~~~lr~~i~~E~-eAi~~Y~~~a~~~~~~~~k~v~~~ia~eEk~H~~~f~~ll~~l~~~~~~ 81 (345)
T 2e0z_A 15 YTKEE---LMEILRLAIIAEL-DAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVT 81 (345)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99899---9999999999899-9999999999829978899999999989999999999999862988899
No 51
>2o4d_A Hypothetical protein PA0269; unknown function; 1.85A {Pseudomonas aeruginosa} SCOP: a.152.1.3 PDB: 2ijc_A
Probab=28.57 E-value=21 Score=13.50 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 89989999999999999
Q gi|254780845|r 73 GLTDDERLMIKRNLGFF 89 (352)
Q Consensus 73 ~Lt~~Ek~~~~~~l~~~ 89 (352)
.|++.+|+++.-..+..
T Consensus 49 ~L~~~~~Elv~l~vs~~ 65 (165)
T 2o4d_A 49 GLERPLIELVYLRTSQI 65 (165)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 52
>1z72_A Transcriptional regulator, putative; structural genomics, PSI, protein structure initiative; 1.45A {Streptococcus pneumoniae TIGR4} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=28.10 E-value=22 Score=13.45 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 036747989985202689989999999999999864333345566640133057799999999999-9997789999999
Q gi|254780845|r 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF-EEAVHSHTFQYII 135 (352)
Q Consensus 57 eEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~-~E~iH~~sYs~il 135 (352)
..-||-+...+ +.|+++.-..+..--..+...-. +.+ ..+...++.++.+..+..+.. .+.-|...+...+
T Consensus 32 ~~HPFv~~l~~----GtL~~e~f~~yl~QDy~yl~~~~---r~l-a~~~~k~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 103 (225)
T 1z72_A 32 INHRFVKELFA----GTIENKVLKDYLIQDYHFFDAFL---SML-GACVAHADKLESKLRFAKQLGFLEADEDGYFQKAF 103 (225)
T ss_dssp HTCHHHHHHHH----TCCCHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHH---HHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999766----99999999999999999999999---999-99987199999999999999999987789999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-
Q ss_conf 9714646999999972001898778899999740121010267774014999999997400014441147889989975-
Q gi|254780845|r 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214 (352)
Q Consensus 136 ~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~- 214 (352)
+.+|.+++++ ....-.|..+.-.+++...... ..+...+.+ ...+|-++. ..+++
T Consensus 104 ~~~gi~~~~~-~~~~~~p~t~~y~~~l~~~a~~--------------~~~~~~l~a-l~~~~~~y~--------~i~~~~ 159 (225)
T 1z72_A 104 KELKVAENDY-LEVTLHPVTKAFQDLMYSAVAS--------------SDYAHLLVM-LVIAEGLYL--------DWGSKD 159 (225)
T ss_dssp HHTTCCTHHH-HSCCCCHHHHHHHHHHHHHHHH--------------TCHHHHHHH-HHHHHHHHH--------HHHTCS
T ss_pred HHCCCCHHHH-HCCCCCCHHHHHHHHHHHHHHC--------------CCHHHHHHH-HHHHHHHHH--------HHHHHH
T ss_conf 9809699998-5167781467999999998725--------------999999999-999999999--------999998
Q ss_pred CCCCHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98012899999998---566-6669999999997655375422067899999999999987688688751
Q gi|254780845|r 215 NKMVGIAEQYQYIM---RDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 (352)
Q Consensus 215 g~m~g~~~~i~~I~---RDE-~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~ 280 (352)
...+..-.--.||. -++ .-|+.....++..+... .+-.+++.+.+..+.++|..|=+.++
T Consensus 160 ~~~~~~~~y~~wi~~y~~~~f~~~v~~l~~~ld~~~~~------~~~~~~~~~~f~~a~~lE~~Fwd~ay 223 (225)
T 1z72_A 160 LALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKN------REDLTELQQRWNQAVALELAFFDIGY 223 (225)
T ss_dssp SCCCSSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60778886459998739987999999999999988399------99999999999999999999999763
No 53
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=26.36 E-value=23 Score=13.24 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 01289999999856666699
Q gi|254780845|r 217 MVGIAEQYQYIMRDESLHLN 236 (352)
Q Consensus 217 m~g~~~~i~~I~RDE~lH~~ 236 (352)
+||+++-++-.+..|.-|..
T Consensus 69 l~GfakfF~~~S~EEreHa~ 88 (212)
T 1z6o_A 69 RAGFSKLFKKLSDEAWSKTI 88 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 57499999999899999999
No 54
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, four-helix bundle, domain swapping; 1.70A {Sulfolobus tokodaii str} SCOP: a.25.1.1
Probab=25.20 E-value=25 Score=13.10 Aligned_cols=107 Identities=23% Similarity=0.289 Sum_probs=63.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHH
Q ss_conf 33057799999999999999778999999997146469999999720018987788999997401210102677740149
Q gi|254780845|r 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 (352)
Q Consensus 106 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352)
..-.-|++..++..++..|..|+......+..+|-.|.- ...|. ......
T Consensus 35 ~~~g~~~~a~~f~~~A~eE~~HA~~l~~~i~~lgg~p~~-----~~~~~------------------------~~~~~~- 84 (144)
T 1j30_A 35 DEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPA-----TDKPI------------------------GTLEQM- 84 (144)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTT-----TSCBC------------------------SSHHHH-
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCC------------------------CCCHHH-
T ss_conf 778879999999999999999999999999867999876-----66676------------------------870989-
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999740001444114788998997598012899999998566666999999999765
Q gi|254780845|r 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 (352)
Q Consensus 186 ~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~ 246 (352)
+...+. ..-.|.+-.|..++ ..++.-.-+.+.+.+++|+.||..|......++..+.
T Consensus 85 l~~~~~-~~e~~~~~~y~~~~---~~A~~~~D~~~~~~l~~i~~~E~~H~~~f~~~L~~le 141 (144)
T 1j30_A 85 IESAIA-GETYEWTQMYPGFA---KVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK 141 (144)
T ss_dssp HHHHHH-HHHHHHHTHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999-99999999999999---9999879999999999999999999999999999977
No 55
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrolase; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=20.36 E-value=30 Score=12.46 Aligned_cols=191 Identities=9% Similarity=0.048 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 3674798998520268998999999999999986433334556664013305779999999999999-977899999999
Q gi|254780845|r 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIIT 136 (352)
Q Consensus 58 Ei~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E-~iH~~sYs~il~ 136 (352)
.-||-+...+ +.|+++.-..+..-=..+.. . -.+.+ ......++.++....+..++..+ .-|...+...++
T Consensus 24 ~HPFv~~l~~----GtL~~~~f~~yl~QD~~yl~--~-~~r~~-a~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 95 (221)
T 3ibx_A 24 SHPFVQGIGR----GTLERDKFRFYIIQDYLYLL--E-YAKVF-ALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIR 95 (221)
T ss_dssp TSHHHHHHHH----TCSCHHHHHHHHHHHHHHHH--H-HHHHH-HHHHHHCCSHHHHHHHHHHHHHHHSCTTSHHHHHHH
T ss_pred CCHHHHHHHC----CCCCHHHHHHHHHHHHHHHH--H-HHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999766----99999999999999899999--9-99999-998642899999999999999999998899999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 71464699999997200189877889999974012101026777401499999999740001444114788998997598
Q gi|254780845|r 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 (352)
Q Consensus 137 ~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~ 216 (352)
.+|.+++++ ......|..+.-.+++...... ..+... +++...+|.++...+ -.+.+.+.
T Consensus 96 ~~g~~~~~~-~~~~~~~~~~~y~~~l~~~a~~--------------~~~~~~-l~al~~~~~~y~~~~----~~l~~~~~ 155 (221)
T 3ibx_A 96 ELQITQKEL-QNACPTLANKSYTSYMLAEGFK--------------GSIKEV-AAAVLSCGWSYLVIA----QNLSQIPN 155 (221)
T ss_dssp HTTCCHHHH-HHCCCCHHHHHHHHHHHHHHHH--------------SCHHHH-HHHTHHHHHHHHHHH----HHHTCSSS
T ss_pred HHCCCHHHH-HCCCCCHHHHHHHHHHHHHHHC--------------CCCHHH-HHHHHHHHHHHHHHH----HHHHHHCC
T ss_conf 929998886-3058876777999999999742--------------762799-999999999999999----99986206
Q ss_pred CCHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 01289999999---8566-6669999999997655375422067899999999999987688688751
Q gi|254780845|r 217 MVGIAEQYQYI---MRDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 (352)
Q Consensus 217 m~g~~~~i~~I---~RDE-~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~ 280 (352)
-+....--.|| .-++ .-|+.....+++.+.+.. +++-.+++.+++..++++|..|=+.++
T Consensus 156 ~~~~~~y~~wi~~~~~~~~~~~~~~~~~~ld~~~~~~----s~~~~~~~~~~f~~~~~lE~~Fwd~ay 219 (221)
T 3ibx_A 156 ALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLAS----SKQEIEKLKEIFITTSEYEYLFWDMAY 219 (221)
T ss_dssp TTTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6764217999998488877999999999999998759----999999999999999999999999976
Done!