RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (352 letters) >gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated. Length = 369 Score = 692 bits (1787), Expect = 0.0 Identities = 235/352 (66%), Positives = 288/352 (81%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A TGL ++ G RVNVDDKR++N R+DVNQL+P KY WAWEKYL+ C NHWMP EV Sbjct: 18 LAVATGLEELEGGAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVN 77 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWKS NGLT+DER ++KRNLGFF++++SLVANNIVLAIYRH++NPECRQYLLRQ Sbjct: 78 MSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQ 137 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDEGE+FNMY EVPSI AK + + +T++L+ P+F TGT + Sbjct: 138 AFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPE 197 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L++L FY + EG++FY GF QILSLGR NKM GIAEQYQYI+RDES+HLNFGID Sbjct: 198 NDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGID 257 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EFQ + R ++ EA LE YA +TMP+G +GLNA + Y++FIA Sbjct: 258 LINQIKLENPHLWTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIA 317 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR QIGL+P + TENPFPWMSE+IDLKKEKNFFETRV EYQ G L WD Sbjct: 318 NRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNFFETRVIEYQTGGALSWD 369 >gnl|CDD|181991 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed. Length = 324 Score = 215 bits (551), Expect = 1e-56 Identities = 96/322 (29%), Positives = 150/322 (46%), Gaps = 23/322 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 ++ W +E + N W+P EVP+ +DL WK L+D+E+ + R G ++L Sbjct: 16 KIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKK---LSDEEKNLYTRVFGGLTLLDTL 72 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVP 153 NN + + ++ PE L AF EAVH+ ++ YI ++L + E F E P Sbjct: 73 QNNNGMPNLMPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEIDEAFEWAEENP 132 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + KA+ + + L V V EG FY+GF L L R Sbjct: 133 YLQKKADIIQDFYEPLKKKILRK------------AAVASVFLEGFLFYSGFYYPLYLAR 180 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G A+ + I+RDESLH + + + E P L +E + + +L+E E Sbjct: 181 QGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEE 240 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 AY VGL A ++Y+++ AN+R +GLEPLF + E W++ + + E Sbjct: 241 AYTELLYDI--VGL-AEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADE 297 Query: 333 K-NFFETRVTEYQQGA-ELKWD 352 +FFE + T Y +GA E D Sbjct: 298 NHDFFEGKGTSYVKGATEATED 319 >gnl|CDD|173476 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional. Length = 330 Score = 161 bits (408), Expect = 4e-40 Identities = 99/325 (30%), Positives = 159/325 (48%), Gaps = 29/325 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W Y A + W E+ + +DL W+ L D ER IK Sbjct: 14 LLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEK---LNDGERHFIK 70 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ R + PE R + Q E +HS T+ +I + DE Sbjct: 71 HVLAFFAASDGIVLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEE 130 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF+ +P+I KA WA ++ SS SF + V + EG++ Sbjct: 131 EKDRLFHAIETIPAIKKKAEWAAKWIN--SSNSF------------AERLVAFAAVEGIF 176 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + +K + P + Q+ Sbjct: 177 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP---RERVQE- 232 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E + + +P +G+N+ QY++F+A+R +G+ ++ ++NPF Sbjct: 233 ---IIKEAVEIEREFICDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYN-SKNPF 288 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345 WM ++I L+ + NFFE RV EYQ+ Sbjct: 289 DWM-DMISLQGKTNFFEKRVGEYQK 312 >gnl|CDD|178110 PLN02492, PLN02492, ribonucleoside-diphosphate reductase. Length = 324 Score = 149 bits (379), Expect = 9e-37 Identities = 101/325 (31%), Positives = 156/325 (48%), Gaps = 29/325 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY WE Y A + W EV + DL W+ LTDDER I Sbjct: 3 LLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEK---LTDDERHFIS 59 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + + PE R + Q E +HS + ++ + D Sbjct: 60 HVLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPK 119 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P + KA+WAL++ D+ F + L F V EG++ Sbjct: 120 EKDRLFNAIETIPCVAKKADWALRWI-------------DSSASFAERLVAFACV-EGIF 165 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + L K +++ Sbjct: 166 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS-------LLKNKLSEER 218 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ EA +E + + +P VG+NA QY++F+A+R +G E ++ NPF Sbjct: 219 VKEIVCEAVEIEKEFVCDALPCALVGMNADLMSQYIEFVADRLLVALGYEKVYN-VVNPF 277 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345 WM E+I L+ + NFFE RV EYQ+ Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYQK 301 >gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional. Length = 410 Score = 119 bits (300), Expect = 1e-27 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGL---------GLCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed. Length = 376 Score = 63.4 bits (155), Expect = 8e-11 Identities = 72/301 (23%), Positives = 127/301 (42%), Gaps = 27/301 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 EK LS W P EV + D + L + E+ + NL + +S+ + +A Sbjct: 42 EKQLSF---FWRPEEVDVSRDRIDY---QALPEHEKHIFISNLKYQTLLDSIQGRSPNVA 95 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN--- 160 + +S PE ++ +F E +HS ++ +II ++ D +F+ I +A Sbjct: 96 LLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDIS 155 Query: 161 -------WALQYTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQ 207 Y L + T K +E + L++ + E + FY FA Sbjct: 156 SYYDDLIEMTSYYHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFAC 215 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRT 263 + M G A+ + I RDE+LHL ++N + ++P + +E +Q+ Sbjct: 216 SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYD 275 Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 + +A E +A G +GLN QY+++I N R +GL+ F+ NP PW Sbjct: 276 LFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPW 335 Query: 323 M 323 + Sbjct: 336 I 336 >gnl|CDD|140023 PRK13967, nrdF1, ribonucleotide-diphosphate reductase subunit beta; Provisional. Length = 322 Score = 60.1 bits (145), Expect = 7e-10 Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 42/292 (14%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+LL K WE+ N W+P ++P+ +DLA W++ + + + L + Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + P + KA + Y + + + V+ E FY+GF + Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDALKRKASS---------------VMLESFLFYSGFYLPM 173 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262 K+ A+ + I+RDE++H + G+ + + + +T E Sbjct: 174 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 227 Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +LH EI YAH+ + G+ P YM++ AN+ +G +P F Sbjct: 228 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAF 274 >gnl|CDD|140022 PRK13966, nrdF2, ribonucleotide-diphosphate reductase subunit beta; Provisional. Length = 324 Score = 59.0 bits (142), Expect = 2e-09 Identities = 64/308 (20%), Positives = 126/308 (40%), Gaps = 42/308 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT E+ + R +++ +++ P Sbjct: 34 NFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQT 168 L AF E+VH+ ++ I ++L E+ + +R E ++ KA LQY + Sbjct: 91 HEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENRNLQRKAEIVLQYYR- 148 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 D+ + V + E FY+GF + K+ A+ + I+ Sbjct: 149 ------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLII 194 Query: 229 RDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 RDE++H + G+ +++ + E + + +L E E+ Y + Sbjct: 195 RDEAVHGYYIGYKFQRGLALVDDVT-------RAELKDYTYELLFELYDNEVEYTQDLYD 247 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 248 E--VGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFFSG 304 Query: 339 RVTEYQQG 346 + Y G Sbjct: 305 SGSSYVIG 312 >gnl|CDD|181390 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit beta; Validated. Length = 311 Score = 49.6 bits (119), Expect = 1e-06 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 42/223 (18%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D W+ L+D+ER R F + E V +I +++ Sbjct: 39 WNPADIDFSRDAEDWEK---LSDEERDYATRLCAQFIAGEEAVTLDIQPLISAMAAEGRL 95 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG------------ELFNMYREVPSITAKA 159 E YL + AFEEA H+ F+ ++G+ E ++F Y E+P+ A Sbjct: 96 EDEMYLTQFAFEEAKHTEAFRRWFDAVGVTEDLSVYTDDNPSYRQIF--YEELPA----A 149 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG---FAQILSLGRANK 216 L +T +Q ++ + V EG+ TG + +I Sbjct: 150 LNRL-----------STDPSPENQ--VRASVTYNHVVEGVLAETGYYAWRKI--CVTRGI 194 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 + G+ E + I DE H+ +G ++ + W F++ Sbjct: 195 LPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNW-DVFEE 236 >gnl|CDD|184425 PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional. Length = 335 Score = 46.7 bits (111), Expect = 9e-06 Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 27/266 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +DL W L +D + +I R +++ A +A H Sbjct: 45 NFWLPEKVPVSNDLNSW---RSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTD 101 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + AF A+H+ ++ I ++L E ++ + V S +LQ + Sbjct: 102 HEQVIYTNFAFMVAIHARSYGTIFSTLCSSE-QIEEAHEWVVS-----TESLQRRARVLI 155 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P + TG + V + G Y GF L K+ ++ + I+RD+ Sbjct: 156 P-YYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDK 208 Query: 232 SLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 +H N+ Q K+ + E + +L+E LE AY E + G + Sbjct: 209 VIH-NYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLREL----YAGFDLA 263 Query: 291 SCEQYMQFI---ANRRCHQIGLEPLF 313 E ++F A + +G E F Sbjct: 264 --EDAIRFSLYNAGKFLQNLGYESPF 287 >gnl|CDD|162774 TIGR02231, TIGR02231, conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown. Length = 525 Score = 29.7 bits (67), Expect = 1.0 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 +++ R N VG + + + E L+ G+D I+IE Sbjct: 386 VNIFRGNGFVGRS-HLENVAPGERFELSLGVD--EGIRIE 422 >gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated. Length = 450 Score = 29.7 bits (68), Expect = 1.2 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%) Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVID-LKKEKNFFE 337 C ++F+ NRR + +E L + E+PFP ++ E I+ L+K FE Sbjct: 265 CPDDLEFL-NRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFE 312 >gnl|CDD|132120 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream region protein. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed so far only in the Chlamydiae, always as part of a two-gene operon, upstream of the homolog of GcvH. Its function is unknown. Length = 686 Score = 28.7 bits (64), Expect = 2.1 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 5/32 (15%) Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 F++ V S+ F + +G+ E E FNMYRE+ Sbjct: 271 TFDQFVSSY-FSF----MGVSESEFFNMYREI 297 >gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase. Length = 346 Score = 28.7 bits (64), Expect = 2.1 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 9/51 (17%) Query: 299 IANRRCHQIGLEPLFK--------YTENPFPWMSEVIDLKKEKN-FFETRV 340 IANR PL K Y E FP+ V LK + N F T + Sbjct: 102 IANRSRFDDSSNPLLKRNPHEFVPYIEIDFPFFPSVDVLKDKGNTLFSTHI 152 >gnl|CDD|165451 PHA03180, PHA03180, helicase-primase primase subunit; Provisional. Length = 1071 Score = 27.1 bits (60), Expect = 6.7 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%) Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 +E+ I RN F + +L NI+L + HL Sbjct: 630 EEQQYINRNEVF---NGNLAIGNIILDVDVHLKQA 661 >gnl|CDD|183909 PRK13237, PRK13237, tyrosine phenol-lyase; Provisional. Length = 460 Score = 27.0 bits (60), Expect = 7.1 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 9/50 (18%) Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK--MVGIAE--QYQYI 227 D+E + VV+EGM Y G A GR + +GI E QY+YI Sbjct: 274 DEELFDEAKELVVVYEGMPSYGGMA-----GRDMEAMAIGIEESVQYEYI 318 >gnl|CDD|152019 pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. AurF is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalysing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes. Length = 295 Score = 26.9 bits (60), Expect = 9.1 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 93 ESLVANNIVLAIYR---HLSNPE-CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 E+++ N + + R + P RQY L + +E H+ FQ I +G G L Sbjct: 83 ETILVNPVARLLLRGALPVDPPSAHRQYALTEIVDECYHALMFQDAIERIGRLTGPLPPP 142 Query: 149 YR 150 R Sbjct: 143 PR 144 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.134 0.412 Gapped Lambda K H 0.267 0.0608 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,763,535 Number of extensions: 362435 Number of successful extensions: 654 Number of sequences better than 10.0: 1 Number of HSP's gapped: 628 Number of HSP's successfully gapped: 24 Length of query: 352 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 258 Effective length of database: 3,963,321 Effective search space: 1022536818 Effective search space used: 1022536818 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.4 bits)