RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)



>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
           activation, iron coupled radical, immune evasion,
           replication; 1.70A {Chlamydia trachomatis} SCOP:
           a.25.1.2 PDB: 2ani_A
          Length = 346

 Score =  317 bits (812), Expect = 3e-87
 Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++  T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIYH-TKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
          Length = 419

 Score =  275 bits (704), Expect = 1e-74
 Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W ++  + ++ER 
Sbjct: 95  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERF 152

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 153 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 212

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P I  KA WAL++ Q                    +  V +   E
Sbjct: 213 DPKESEFLFNAIHTIPEIGEKAEWALRWIQD-------------ADALFGERLVAFASIE 259

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +   +K +      ++ 
Sbjct: 260 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEK- 318

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 319 ------IVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VE 371

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 372 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 403


>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond,
           metal binding protein; 1.63A {Corynebacterium
           ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A
           1kgn_A 1uzr_A*
          Length = 329

 Score =  272 bits (697), Expect = 8e-74
 Identities = 61/322 (18%), Positives = 122/322 (37%), Gaps = 27/322 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +     N W+P ++P+ +D+  W     +T  E+L   R        +++ 
Sbjct: 24  IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 80

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154
                +++                AF E+VH+ ++  I  +L       E F    E  +
Sbjct: 81  GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 140

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA   + Y              + D    +   V   + E   FY+GF   + L   
Sbjct: 141 LQRKAKIIMSYY-------------NGDDPLKK--KVASTLLESFLFYSGFYLPMYLSSR 185

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++    EI 
Sbjct: 186 AKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIE 245

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK 331
           Y  +      +G      ++++++ AN+  + +G E LF   +   +P    S   +  +
Sbjct: 246 YTEDIYDD--LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADE 302

Query: 332 EKNFFETRVTEYQQG-AELKWD 352
             +FF    + Y  G AE   D
Sbjct: 303 NHDFFSGSGSSYVIGKAEDTTD 324


>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
           ribonucleotide reductase, dinuclear metal-cluster; 2.2A
           {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A
           1xsm_A 2uw2_A 3hf1_A 2vux_A
          Length = 390

 Score =  272 bits (696), Expect = 1e-73
 Identities = 92/342 (26%), Positives = 155/342 (45%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   
Sbjct: 63  PTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA--- 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  
Sbjct: 120 LKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSL 179

Query: 134 IITSLGLDEGELFNM---YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  E   +      +P +  KA+WAL++                 +    +  
Sbjct: 180 LIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYGERV 226

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 227 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK------- 279

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HL  K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G  
Sbjct: 280 HLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN 339

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +F+  ENPF +M   I L+ + NFFE RV EYQ+   +   
Sbjct: 340 KIFR-VENPFDFMEN-ISLEGKTNFFEKRVGEYQRMGVMSNS 379


>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
          Length = 345

 Score =  265 bits (677), Expect = 1e-71
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 27/319 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I   L    SS+
Sbjct: 37  MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 93

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYRE 151
           +LV   ++      L NPE + +   Q   E ++S  +  ++ +   D     LF     
Sbjct: 94  NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 153

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P +  KA +  ++                D     +  V +   EG++    +A +  L
Sbjct: 154 LPEVKHKAAFIERWISN-------------DDSLYAERLVAFAAKEGIFQAGNYASMFWL 200

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+A   + I RD   + +F   +         HL TK   +    ++ EA  +
Sbjct: 201 TDKKIMPGLAMANRNICRDRGAYTDFSCLLFA-------HLRTKPNPKIIEKIITEAVEI 253

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  Y   ++P    G++  S   Y++F+A+      G E  +    NPF +M +V    K
Sbjct: 254 EKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYN-AVNPFEFMEDVATAGK 312

Query: 332 EKNFFETRVTEYQQGAELK 350
              FFE +V++YQ+ +++ 
Sbjct: 313 -TTFFEKKVSDYQKASDMS 330


>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
           oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
           PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B*
           1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A
           1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ...
          Length = 375

 Score =  259 bits (663), Expect = 6e-70
 Identities = 73/340 (21%), Positives = 136/340 (40%), Gaps = 27/340 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           V +    KY    +      +  W P EV +  D   +++   L + E+ +   NL +  
Sbjct: 25  VARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+   
Sbjct: 82  LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIV 141

Query: 151 EVPSITAKANWALQY-----------------TQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               I  +A     Y                 T T++  + T   ++  ++    L +  
Sbjct: 142 TNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCL-MSV 200

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK----IEN 249
              E + FY  FA   +      M G A+  + I RDE+LHL     ++N ++       
Sbjct: 201 NALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPE 260

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                +E +Q+   +  +A   E  +A         +GLN     QY+++I N R   +G
Sbjct: 261 MAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVG 320

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           L+  F+   NP PW++  +     +    E  V+ Y  G 
Sbjct: 321 LDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQ 360


>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
           reductase, four-helix bundle, dimanganese CLU
           oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
           3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
          Length = 319

 Score =  240 bits (614), Expect = 3e-64
 Identities = 60/321 (18%), Positives = 119/321 (37%), Gaps = 26/321 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +    +N W+P +VP+ +D+  W++   LT  E+ +  R        ++L 
Sbjct: 14  ISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQ 70

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPS 154
                 ++      P     L   +F EAVH+ ++  I ++L    D    +    E   
Sbjct: 71  NVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAP 130

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA    Q+ +                +      +  V  E   FY+GF   +     
Sbjct: 131 LQRKAQIIQQHYRG---------------DDPLKKKIASVFLESFLFYSGFWLPMYFSSR 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E    E+ 
Sbjct: 176 GKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQ 235

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK 331
           Y  E   +      A   + ++ + AN+    +G EPLF       NP    +   +  +
Sbjct: 236 YTDELYAE---TPWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADE 292

Query: 332 EKNFFETRVTEYQQGAELKWD 352
             +FF    + Y  G  ++ +
Sbjct: 293 NHDFFSGSGSSYVMGKAVETE 313


>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism,
           oxidoreductase; 2.10A {Salmonella typhimurium} SCOP:
           a.25.1.2 PDB: 2bq1_I* 2r2f_A
          Length = 319

 Score =  239 bits (611), Expect = 6e-64
 Identities = 56/321 (17%), Positives = 117/321 (36%), Gaps = 26/321 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        +++ 
Sbjct: 14  IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQ 70

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
                 ++      P     L   +F EAVH+ ++  I ++L   +     +    E P 
Sbjct: 71  NIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPP 130

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA   L +                  +      +  V  E   FY+GF   +     
Sbjct: 131 LQRKAQIILAHY---------------VSDEPLKKKIASVFLESFLFYSGFWLPMYFSSR 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E    EI 
Sbjct: 176 GKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIR 235

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK 331
           Y      +          + ++ + AN+    +G E LF       NP    +   +  +
Sbjct: 236 YTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSPNADE 292

Query: 332 EKNFFETRVTEYQQGAELKWD 352
             +FF    + Y  G  ++ +
Sbjct: 293 NHDFFSGSGSSYVMGKTVETE 313


>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
           PY03671, structural genomics consortium, SGC,
           oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
          Length = 349

 Score =  222 bits (567), Expect = 7e-59
 Identities = 88/338 (26%), Positives = 158/338 (46%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           ++    ++++LN  S+   L P+ Y   W  Y  A  + W   E+ +  DL  ++    L
Sbjct: 24  QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---L 80

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +
Sbjct: 81  NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140

Query: 135 ITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D      LF+    +P+I  KA WA ++    +S                +  V
Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS--------------FAERIV 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
                EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P 
Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 246

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              +   +       EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   
Sbjct: 247 NVVQNIVK-------EAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +F  ++NPF WM ++I L+ + NFFE RV +YQ+   +
Sbjct: 300 VFH-SKNPFNWM-DLISLQGKTNFFEKRVADYQKSGVM 335


>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
           putative class I ribonucleotide reductase,
           ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
           {Bacillus halodurans c-125}
          Length = 346

 Score =  212 bits (540), Expect = 9e-56
 Identities = 84/338 (24%), Positives = 159/338 (47%), Gaps = 18/338 (5%)

Query: 21  DKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
              +LN + S+V     +++ WA+  Y +   N W P E+ M  D   + +   LT+ E+
Sbjct: 19  STGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQ 75

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
              K+ +G  A  +S V  +  +    +L++      +   +F+E VH+ ++ Y+++SL 
Sbjct: 76  EAFKKIIGLLAFLDS-VQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLV 134

Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
               +  +F  ++    +  +  + +   +            +   +   +  V+ V+ E
Sbjct: 135 PKATQDEIFEYWKHDDVLKERNEFIIDGYEKF--------VDNPTPKTFLESIVYDVILE 186

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ FY+GFA   +L R  KMV  +    YI RDE LH+    ++  ++ +E P L T+E 
Sbjct: 187 GLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEET 246

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYT 316
           +   +T L +A  LE  +    +     G+N    E Y+ FIAN+R  Q+G+E  + +  
Sbjct: 247 KTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIK 306

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQG-AELKWD 352
            NP  W+    D+   K +FFE +  +Y +  A+  +D
Sbjct: 307 HNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFD 344


>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
           RNR, radical enzyme, split SIGN metallocofactor; 1.36A
           {Corynebacterium ammoniagenes} PDB: 1uzr_A*
          Length = 296

 Score =  209 bits (532), Expect = 1e-54
 Identities = 53/290 (18%), Positives = 109/290 (37%), Gaps = 24/290 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +     N W+P ++P+ +D+  W     +T  E+L   R        +++ 
Sbjct: 23  IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 79

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
                +++                AF E+VH+ ++  I  +L       E F    E  +
Sbjct: 80  GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 139

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA   + Y                + +      V   + E   FY+GF   + L   
Sbjct: 140 LQRKAKIIMSYY---------------NGDDPLKKKVASTLLESFLFYSGFYLPMYLSSR 184

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++    EI 
Sbjct: 185 AKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIE 244

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWM 323
           Y  +      +G      ++++++ AN+  + +G E LF   E    P +
Sbjct: 245 YTEDIYDD--LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPAI 291


>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide
           reductase, oxidoreductase, DNA replication, iron,
           DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
          Length = 311

 Score =  202 bits (514), Expect = 1e-52
 Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 28/306 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L D+E+ 
Sbjct: 29  NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKH 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 86  FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D      LF+    +P++  KA WA ++                D     +  V     E
Sbjct: 146 DEKERMNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVE 191

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P    +  
Sbjct: 192 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQN- 250

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F   +
Sbjct: 251 ------IVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFH-AK 303

Query: 318 NPFPWM 323
           NPF WM
Sbjct: 304 NPFNWM 309


>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
           DIIRON, carboxylate, oxidase, ligand, cavity,
           monooxygenase; HET: MYR; 1.90A {Mycobacterium
           tuberculosis}
          Length = 323

 Score =  201 bits (511), Expect = 3e-52
 Identities = 51/297 (17%), Positives = 102/297 (34%), Gaps = 20/297 (6%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLA 103
           +       W P ++    D A W+    L+DDER    R    F + E  V  +I   ++
Sbjct: 33  FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPFMS 89

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
             R         YL + AFEEA H+  F+  + ++G+ E        ++P+        L
Sbjct: 90  AMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDL-HRYLDDLPAYRQIFYAEL 148

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAE 222
                            +    ++    +  + EGM   TG+     +      + G+ E
Sbjct: 149 PE------CLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQE 202

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I  DE  H+ +G     +    +   W   F+ +   ++  A  L          +
Sbjct: 203 LVRRIGDDERRHMAWGTFTCRRHVAADDANW-TVFETRMNELIPLALRLIEEGFALYGDQ 261

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS-EVIDLKKEKNFFET 338
               L+    + ++Q+  ++   + G     +    P   +  +    + E  F + 
Sbjct: 262 PPFDLSK---DDFLQYSTDKGMRRFGTISNAR--GRPVAEIDVDYSPAQLEDTFADE 313


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 36/284 (12%), Positives = 67/284 (23%), Gaps = 122/284 (42%)

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY--LLR---QAFEEA----- 125
           DDE            +   LV   +   +   +   +  Q+  +L      FE       
Sbjct: 51  DDE----------PTTPAELVGKFLGY-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99

Query: 126 -VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT--LSSPSFTTGTKDAD 182
            +H+     +   L  +            ++         Y     ++   F   +  A 
Sbjct: 100 DIHA-----LAAKLLQEND---------TTLVKTKELIKNYITARIMAKRPFDKKSNSA- 144

Query: 183 QEFLQDLFV--------FYVVFEGM-----WF---------YTGFAQILSLGRANKMVGI 220
                 LF            +F G      +F         Y      L       +   
Sbjct: 145 ------LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-------IKFS 191

Query: 221 AEQYQYIMRDESL---HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           AE    ++R           G++++          W           L            
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILE---------W-----------LENP--------- 222

Query: 278 ETMP-KGFVGLNAP-SCE--------QYMQFIANRRCHQIGLEP 311
              P K ++ L+ P SC          Y+  +       +G  P
Sbjct: 223 SNTPDKDYL-LSIPISCPLIGVIQLAHYV--VT---AKLLGFTP 260



 Score = 36.5 bits (84), Expect = 0.009
 Identities = 31/202 (15%), Positives = 52/202 (25%), Gaps = 97/202 (48%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML+  +     L  +     + Y++  N+H                    L   +++ I 
Sbjct: 338 MLSISN-----LTQE---QVQDYVNKTNSH--------------------LPAGKQVEI- 368

Query: 84  RNLGFFASSESLV--ANNIVLA-----IY---RHLSNPECRQYLLRQA---FEE------ 124
                     SLV  A N+V++     +Y     L   +     L Q+   F E      
Sbjct: 369 ----------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-LDQSRIPFSERKLKFS 417

Query: 125 ------AV--HSH----TFQYIITSLGLDEGEL---------FNMY-----RE-----VP 153
                 A   HSH        I   L  +             ++ +     R        
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477

Query: 154 S----ITAKA-NW--ALQYTQT 168
                I      W    Q+  T
Sbjct: 478 RIVDCIIRLPVKWETTTQFKAT 499



 Score = 33.0 bits (75), Expect = 0.11
 Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 54/222 (24%)

Query: 65   LALWKSKNGLTD-----DERLMIKRNLGFFASSESLVANNIV-LAIYRHLSNPECRQYLL 118
            + L+K+     D     D     K   GF  S   +V NN V L I  H    + ++  +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHF--KDTYGF--SILDIVINNPVNLTI--HFGGEKGKR--I 1684

Query: 119  RQAFEEAVHSHTFQYIITSLGLDEGELFN--MYREV----PSITAKANWAL----QYTQT 168
            R+ +   +    F+ I+      +G+L    +++E+     S T ++   L    Q+TQ 
Sbjct: 1685 RENYSAMI----FETIV------DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ- 1733

Query: 169  LSSPSFTTGTKDADQEFL-QDLFVFYVVFEG--MWFYTGFAQILSLGRANKMV------G 219
               P+ T   K A ++   + L      F G  +  Y   A +  +     +V      G
Sbjct: 1734 ---PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790

Query: 220  IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
            +  Q   + RDE    N+G+  I      NP      F Q++
Sbjct: 1791 MTMQVA-VPRDELGRSNYGMIAI------NPGRVAASFSQEA 1825



 Score = 29.1 bits (65), Expect = 1.7
 Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 49/144 (34%)

Query: 228 MRDESLH---LNFGIDVINQIKIENP-HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            R  +L    L   + V        P   +    Q + +       L E         +G
Sbjct: 6   TRPLTLSHGSLEHVLLV--------PTASFFIASQLQEQ---FNKILPEPT-------EG 47

Query: 284 FVGLNAPS-----CEQYMQFIANRRC-HQIG-----LEPLFKYTENPFPWMSEV------ 326
           F   + P+       +++ ++++     ++G     L       EN +   +++      
Sbjct: 48  FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107

Query: 327 --------IDLKKE--KNFFETRV 340
                   +   KE  KN+   R+
Sbjct: 108 LLQENDTTLVKTKELIKNYITARI 131


>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase,
           effector protein, T201A, aromatic hydrocarbons
           catabolism, FAD, flavoprotein; 1.52A {Pseudomonas
           mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A
           3i63_A
          Length = 500

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 44/221 (19%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 43  WEKYLSACNNHWMPTEVPMQDD---------LALWKSKNGLTDDERLM--IKRNLGFFAS 91
           WE Y         P  V +Q +          AL ++K     D   +  +K + G  A 
Sbjct: 44  WESYDEP-YKTSYPEYVSIQREKDAGAYSVKAALERAKIYENSDPGWISTLKSHYGAIAV 102

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
            E   A      + R    P  R        +E  H     +        + +    +R 
Sbjct: 103 GE-YAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRA 161

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
                    WA    +       T   +DA    +   F F   F  M  + G A   + 
Sbjct: 162 Y----HSNEWAAIAAKHFFDDIITG--RDAISVAIMLTFSFETGFANM-QFLGLAADAA- 213

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             A      A     I  DES H   G   + Q+ IEN   
Sbjct: 214 -EAGDYT-FANLISSIQTDESRHAQQGGPAL-QLLIENGKR 251


>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
           monooxygenase; 1.70A {Methylococcus capsulatus str}
           SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A
           1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A
           1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
          Length = 512

 Score = 33.3 bits (76), Expect = 0.082
 Identities = 24/146 (16%), Positives = 39/146 (26%), Gaps = 8/146 (5%)

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 E +   L Q  +E  H+H   Y+      +  +           T       + 
Sbjct: 112 DSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDA--RRTRTIGPLWKG 169

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            + + S  F +G  DA +  L    V    F                 AN        + 
Sbjct: 170 MKRVFSDGFISG--DAVECSLNLQLVGEACFTNP-LIVAVT---EWAAANGDEITPTVFL 223

Query: 226 YIMRDESLHLNFGIDVINQIKIENPH 251
            I  DE  H+  G   +  I  +   
Sbjct: 224 SIETDELRHMANGYQTVVSIANDPAS 249


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 30.2 bits (67), Expect = 0.72
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 198  GMWFYTGFAQILSLG------RANKMVGIAEQYQYIM 228
            G W   G  QIL+ G       A+ +  I EQ++Y++
Sbjct: 1390 GAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVL 1426



 Score = 27.9 bits (61), Expect = 4.1
 Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 34/96 (35%)

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA----------TLLE 272
           Q   +M D    LN G+  +       P L  KEF  K R  L E           T LE
Sbjct: 719 QKSPVMAD----LNGGLQFV-------PEL--KEFTAKLRKELVETSEVRKAVSIETALE 765

Query: 273 ----------IAYAH-ETMPKGFVGLNAPSCEQYMQ 297
                      AYA  E  P+  + L+ P  + Y Q
Sbjct: 766 HKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQ 801


>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase;
           2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A*
           3chu_A 2jcd_A
          Length = 336

 Score = 28.0 bits (62), Expect = 3.4
 Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 93  ESLVAN----NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           E L+A      ++  ++    +P  R+ + +   +E+ H++   
Sbjct: 101 EQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHM 144


>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
           biosynthesis, heme, iron, lipid synthesis, lyase,
           metal-binding; HET: HEM T25; 1.55A {Arabidopsis
           thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A*
           3cli_A*
          Length = 495

 Score = 27.9 bits (61), Expect = 3.5
 Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPECRQYLLRQA 121
            ++ +   K G++ +E          F +    +       + R      +     L + 
Sbjct: 267 GEILVEADKLGISREEATHNLLFATCFNTWGG-MKILFPNMVKRIGRAGHQV-HNRLAEE 324

Query: 122 FEEAVHSH 129
               + S+
Sbjct: 325 IRSVIKSN 332


>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A
           {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
           1zny_A* 1znz_A* 1s4q_A 1z8f_A
          Length = 207

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           R     +  Q  L  A  E      F  ++ +  L+ 
Sbjct: 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES 190


>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus
           furiosus}
          Length = 345

 Score = 27.1 bits (60), Expect = 6.2
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            T +E   +   L     +E L A N+   + R+  +   R+ LL  A EE  H   F  
Sbjct: 15  YTKEE---LMEILRLAIIAE-LDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMA 70

Query: 134 IITSLGLDE-GELFNMYREVPSITAKAN 160
           ++ +L  ++  EL   + EV  +T    
Sbjct: 71  LLLNLDPEQVTELKGGFEEVKELTGIEA 98


>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
           acid biosynthesis, heme, iron, lipid synthesis, lyase,
           metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
           PDB: 3dam_A* 3dbm_A*
          Length = 473

 Score = 26.8 bits (58), Expect = 8.3
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
             +     K G+  DE +        F +    V       +       E     L +  
Sbjct: 249 TPVMEQAEKLGVPKDEAVHNILFAVCFNTFGG-VKILFPNTLKWIGLAGENLHTQLAEEI 307

Query: 123 EEAVHSHTFQYI 134
             A+ S+    +
Sbjct: 308 RGAIKSYGDGNV 319


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,041,079
Number of extensions: 136783
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 31
Length of query: 352
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 259
Effective length of database: 3,438,538
Effective search space: 890581342
Effective search space used: 890581342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)